PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc010894.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 168aa    MW: 19301.9 Da    PI: 8.0762
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc010894.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.22.3e-3871211128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              l pG+rF+Ptdeelv +yL++kv +++l++  +i e+ +++k++Pw Lp      + e yfFs+r          +rat sgyWk 
  Itr_sc010894.1_g00001.1   7 LFPGIRFQPTDEELVFHYLHPKVFNSPLPAY-IILEIdNVCKSDPWVLP------DGERYFFSRR---------CSRATLSGYWKP 76 
                              579***************************5.5666659*********9......4689***985.........6799******** PP

                      NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              tgkdk++ ++   ++ vg+kktLvfy+g+ap+g+ktdW+mhey+l
  Itr_sc010894.1_g00001.1  77 TGKDKKIAVSgeAQSIVGMKKTLVFYTGKAPNGSKTDWIMHEYSL 121
                              ********98555556***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-475139IPR003441NAC domain
PROSITE profilePS5100546.9097139IPR003441NAC domain
PfamPF023657.2E-269121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDNLSLLFPG IRFQPTDEEL VFHYLHPKVF NSPLPAYIIL EIDNVCKSDP WVLPDGERYF  60
FSRRCSRATL SGYWKPTGKD KKIAVSGEAQ SIVGMKKTLV FYTGKAPNGS KTDWIMHEYS  120
LADAPQPEEN WVLCRIFLKK RGGRNDERSH SSSRDAFHDF FAPERADL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-33714017166NO APICAL MERISTEM PROTEIN
1ut4_B2e-33714017166NO APICAL MERISTEM PROTEIN
1ut7_A2e-33714017166NO APICAL MERISTEM PROTEIN
1ut7_B2e-33714017166NO APICAL MERISTEM PROTEIN
3swm_A3e-33714020169NAC domain-containing protein 19
3swm_B3e-33714020169NAC domain-containing protein 19
3swm_C3e-33714020169NAC domain-containing protein 19
3swm_D3e-33714020169NAC domain-containing protein 19
3swp_A3e-33714020169NAC domain-containing protein 19
3swp_B3e-33714020169NAC domain-containing protein 19
3swp_C3e-33714020169NAC domain-containing protein 19
3swp_D3e-33714020169NAC domain-containing protein 19
4dul_A2e-33714017166NAC domain-containing protein 19
4dul_B2e-33714017166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184661.15e-80PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY932e-52NAC83_ARATH; NAC domain-containing protein 83
TrEMBLS5XG864e-55S5XG86_CAMSI; NAC transcription factor
STRINGGLYMA18G53954.16e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-54NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]