PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc010762.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GATA | ||||||||
Protein Properties | Length: 147aa MW: 15738.3 Da PI: 11.224 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52 | 9.6e-17 | 111 | 144 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++t+Tp+WR+gp g tLCn+CG++y + Itr_sc010762.1_g00001.1 111 CSHCKATETPQWRKGPMGLNTLCNPCGIRYSTGR 144 ******************************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.991 | 105 | 147 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.4E-6 | 105 | 145 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-12 | 107 | 141 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-14 | 109 | 142 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.59E-11 | 110 | 140 | No hit | No description |
Pfam | PF00320 | 5.0E-14 | 111 | 142 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MPQVGPGRKK KKSKVETGHK SAATPSAVAT VVLPFAAVVL PSAAAAAAAA VSLSATLVYH 60 GGSSSTLNTM SNLYFDFIVP IRKRTKRARS ASNPWIRNGV GVPLLKEFRE CSHCKATETP 120 QWRKGPMGLN TLCNPCGIRY STGRLWK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019197211.1 | 3e-36 | PREDICTED: GATA transcription factor 9-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 3e-14 | GATA family protein |