PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc010236.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 118aa    MW: 12589.1 Da    PI: 8.4808
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc010236.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.74.9e-15105585128
                      NAM  85 atgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              atgkdk++ ++   + +vg+kk+Lvfykg+ ++g+ktdW+mhey+l
  Itr_sc010236.1_g00002.1  10 ATGKDKKIGVSgeAQGVVGIKKSLVFYKGKPSNGSKTDWMMHEYSL 55 
                              79******998545556***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.032175IPR003441NAC domain
SuperFamilySSF1019417.98E-141060IPR003441NAC domain
PfamPF023651.3E-62155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MAAVEPPCLA TGKDKKIGVS GEAQGVVGIK KSLVFYKGKP SNGSKTDWMM HEYSLGYAPQ  60
PQRSRAASLV PAFRDFFADL NLAPASSSSS RSSSVTESCN YHTGDHQEAT SCSRESVI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184661.11e-34PREDICTED: NAC domain-containing protein 83-like
TrEMBLS5XG867e-17S5XG86_CAMSI; NAC transcription factor
STRINGevm.model.supercontig_99.632e-12(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-15NAC domain containing protein 83