PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc009830.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 201aa MW: 21962.8 Da PI: 8.8655 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 31.8 | 4.5e-10 | 62 | 104 | 2 | 45 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45 fY eY++ vGF+vr+s+ k+ rng++t r++vCs++g+++ + Itr_sc009830.1_g00001.1 62 FYFEYGRAVGFDVRRSTVKND-RNGNTTVRHLVCSRQGFKQVVR 104 9**************997776.8899*************98655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.1E-7 | 62 | 104 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
ILGCVRCLHG VSFGSVDTFS PETDSTTTYT SNDTKFWAPI SEDSITPHIG QVFGTVEQGE 60 VFYFEYGRAV GFDVRRSTVK NDRNGNTTVR HLVCSRQGFK QVVRDQFAEL EVGNGVAVGG 120 EDQERILMVS NAVQALRESL SVGDDSTPMR RGKHSVIENF TGNVAVDPVV VIRPTVVARN 180 KGRGKRLKGG REIAVTMKKP G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28530.1 | 5e-07 | FAR1-related sequence 10 |