PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc008279.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 199aa MW: 22895.1 Da PI: 8.487 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.7e-05 | 117 | 137 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk+F + L+ H++ H Itr_sc008279.1_g00001.1 117 CKKCGKVFDSIRALNGHMQIH 137 ******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.2E-9 | 13 | 36 | No hit | No description |
SMART | SM00355 | 0.22 | 14 | 36 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0061 | 14 | 36 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 16 | 36 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.8E-4 | 106 | 139 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.2E-9 | 110 | 137 | No hit | No description |
Pfam | PF13912 | 5.0E-6 | 114 | 138 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0022 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.887 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MVFMEEEEAQ EQKFICKFCD KVCLSGRSLG GHMRGHLPLI AAAKKQKTKA DKNSDQNSVQ 60 SKSGKIREKG KSLVLGEDDD GLTENPNKSW KVFYSKESLK RFPDNQRRYD EEEHHLCKKC 120 GKVFDSIRAL NGHMQIHSKR SRLSREESME NQCPVLKKRS AIRYEITENS PFSVASDLEE 180 AAVCLMMLSR GFQEWDFVL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019157081.1 | 1e-102 | PREDICTED: zinc finger protein ZAT4-like | ||||
TrEMBL | A0A2G2V9E9 | 6e-44 | A0A2G2V9E9_CAPBA; Uncharacterized protein | ||||
STRING | Solyc02g088670.1.1 | 4e-43 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6927 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 3e-15 | C2H2-like zinc finger protein |