PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc006674.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YA

Protein Properties

Length: 325aa MW: 35429.7 Da PI: 8.0459

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc006674.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.8	3.1e-32	172	228	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RR++Rak+e +kkl +k rkpylheSRh+hAlrR+RgsgGrF Itr_sc006674.1_g00001.1 172 QEPVYVNAKQYHGILRRRESRAKAELQKKL-IKVRKPYLHESRHQHALRRARGSGGRF 228 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.6E-35	170	231	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.324	171	231	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.8E-27	173	228	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-24	174	196	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	176	196	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.8E-24	205	228	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MQPNSKTANL VGANPHNIPH SGDSAEPWWK TAGYNSVPPG MVQGDASDSS SLEQSLDDQS 60 QSDGGVNHEG DDGTEKSQTS KPSHQGRMLE GSCGQVDKNL QPVASVIPDG SDEHLTQPQQ 120 LEFVGHSIAC APNPYIDPYF GQMIAAYGQP LVPPDILDMH RMRMPLPLEM TQEPVYVNAK 180 QYHGILRRRE SRAKAELQKK LIKVRKPYLH ESRHQHALRR ARGSGGRFVK KSDSNAPKQT 240 GSGASLSPRS LTPPAEAAME ADAALRNHYI TCIPPSLQEE APRASNSEVP LYPSCGHAIR 300 SNMIQRGSRV WISGVQAGRQ FIPGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-19	171	249	1	78	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155435.1	1e-179	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_019155438.1	1e-179	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X4
Refseq	XP_019155439.1	1e-179	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X4
Swissprot	Q9LXV5	1e-56	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A1J6I1Z6	1e-107	A0A1J6I1Z6_NICAT; Nuclear transcription factor y subunit a-1
STRING	XP_009767513.1	1e-104	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3111	22	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.3	1e-52	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]