PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc006412.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GATA | ||||||||
Protein Properties | Length: 210aa MW: 23447.6 Da PI: 9.8968 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.8 | 6.2e-18 | 117 | 150 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++t+Tp+WR+gp g+ tLCn+CG++yr + Itr_sc006412.1_g00003.1 117 CSHCKATETPQWRKGPMGPNTLCNPCGVRYRTGR 150 *******************************877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.4 | 111 | 147 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.0E-15 | 111 | 165 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.18E-15 | 115 | 174 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.0E-14 | 115 | 148 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.02E-14 | 116 | 163 | No hit | No description |
Pfam | PF00320 | 1.2E-15 | 117 | 150 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MLVWEGSTIT PGDTSTKVNF NYTYSSVSAT PVQKKLEDIE GRKSAVAAAV LPSAFAAAAV 60 LPMSNLYFDF IVPIRKRTKR ARSASNPWIR NGLPSSSTTA SEKTPCRQEG SKEFRECSHC 120 KATETPQWRK GPMGPNTLCN PCGVRYRTGR LFPEYRPANS PTFVPTLHSS YHRKVVEMRR 180 KGVEEAVVVD EDSVKRDAEE DKKKMEEAKN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019197212.1 | 3e-69 | PREDICTED: GATA transcription factor 11-like | ||||
TrEMBL | A0A2J6K5W3 | 2e-42 | A0A2J6K5W3_LACSA; Uncharacterized protein | ||||
STRING | XP_009795845.1 | 1e-39 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3134 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 8e-34 | GATA transcription factor 9 |