PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc006031.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 192aa    MW: 21698.4 Da    PI: 7.0584
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc006031.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.46.2e-4571331128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              l pG+rF+Ptdeelv +yL++kv +++l++  +i e+ +++k++PwdLp  +   + e yfF++r+ k+ +g+r + at sgyWka
  Itr_sc006031.1_g00001.1   7 LFPGIRFQPTDEELVLHYLHPKVFNSPLPAY-IILEIdNVCKSDPWDLPGDL---DGERYFFTTREVKNGSGNRFSIATLSGYWKA 88 
                              579***************************5.5666659**********554...5699*************************** PP

                      NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              tgkdk+++++   +++vg+kktLvfy+g+ap+g+ktdW+mheyrl
  Itr_sc006031.1_g00001.1  89 TGKDKRIVVSgeAQSVVGMKKTLVFYTGKAPNGSKTDWIMHEYRL 133
                              ********98555666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-525150IPR003441NAC domain
PROSITE profilePS5100550.6727151IPR003441NAC domain
PfamPF023651.1E-259133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDNLSLLFPG IRFQPTDEEL VLHYLHPKVF NSPLPAYIIL EIDNVCKSDP WDLPGDLDGE  60
RYFFTTREVK NGSGNRFSIA TLSGYWKATG KDKRIVVSGE AQSVVGMKKT LVFYTGKAPN  120
GSKTDWIMHE YRLADAPQPE ENWVLCRMKK RGGRNGERSR DAFHDFFAPE RADLNLAPAS  180
SSSLRSSDHQ DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-37714815165Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184661.18e-93PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY932e-60NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A482ETG69e-69A0A482ETG6_IPOBA; NAC14
STRINGGLYMA18G53954.12e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-62NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]