PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc005890.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 21600.8 Da PI: 9.7374 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.2 | 1.9e-22 | 21 | 70 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien+ r vtfskRr+ ++KKA+E+S+LC++e+ +++fs++gk +++s+ Itr_sc005890.1_g00001.1 21 RIENEVHRLVTFSKRRTSLFKKASEMSTLCGTEIVMVVFSPSGKPFTFSN 70 9***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.011 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-26 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.24E-24 | 13 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-18 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-23 | 21 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-18 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-18 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSHRNTSRGV TRGRHRVPLA RIENEVHRLV TFSKRRTSLF KKASEMSTLC GTEIVMVVFS 60 PSGKPFTFSN PDMNAVLTKY FGEIPTTEAN IAEPIIRAHQ EAKMRAMTSQ INILEAQIDE 120 EMLVNQALRE AKKGRPSNSD LQLPELQSMK HRMETLSDQV MEKLNMFFIM EAQSQAMETR 180 FGANDGAGPS GV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 2e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019179195.1 | 3e-69 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A328DKU4 | 2e-57 | A0A328DKU4_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-27 | AGAMOUS-like 61 |