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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc005313.1_g00003.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | Nin-like | ||||||||
| Protein Properties | Length: 280aa MW: 32399.1 Da PI: 6.6259 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 57.5 | 2.6e-18 | 137 | 182 | 4 | 49 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49
+is +ls yF++pi +AAkeL v +LKr+C ++GI RWPhR++
Itr_sc005313.1_g00003.1 137 TISKAMLSTYFHMPIYKAAKELRVEYRILKRRCEELGIFRWPHRQL 182
79999***************************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51519 | 14.129 | 118 | 206 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 3.6E-16 | 138 | 183 | IPR003035 | RWP-RK domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 280 aa Download sequence Send to blast |
MANHVSSSSA FTNQIVYPSS DASEYPFWDA QCEQFPSTYF NAINNDEPLL NMDFDPFWNF 60 EHNLECLIGD TALNPLGMDG VLLPSASVIP IECDITPTSN AVAVKQDTTT GTKESMIEKI 120 VRRQSKRTKK NFRDPSTISK AMLSTYFHMP IYKAAKELRV EYRILKRRCE ELGIFRWPHR 180 QLELGSIEDD PELRDVLKEI KDRREMMLRN PHLKLHPAEI KLRDACTRKK RYREMMSFIS 240 PCTLPVPSFV VDHILPFTVD PPSRAMEENK SFQLLFDGFQ |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 162 | 167 | RILKRR |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA4274 | 21 | 42 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G18790.1 | 1e-17 | RWP-RK domain-containing protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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