PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc005214.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 21290.6 Da PI: 8.3807 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 108.8 | 4.1e-34 | 9 | 107 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrr+Ca++Cv+apyf++++ p fa++hk+FGasn++kll +lp ++r a+ s+ eA+ar++dP+yG+v++i +lqq Itr_sc005214.1_g00001.1 9 PCGACKFLRRRCAPGCVFAPYFCSDDgPVIFAAIHKVFGASNLSKLLLQLPVHRRFPAVFSIGIEAQARMEDPIYGCVSHIIALQQ 94 7***********************9989********************************************************** PP DUF260 86 qleqlkaelallk 98 q+ +l+a++ +++ Itr_sc005214.1_g00001.1 95 QVLNLRAQVMEAR 107 *******998776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.402 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-33 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence Send to blast |
MASSGAGSPC GACKFLRRRC APGCVFAPYF CSDDGPVIFA AIHKVFGASN LSKLLLQLPV 60 HRRFPAVFSI GIEAQARMED PIYGCVSHII ALQQQVLNLR AQVMEARALQ AQYLLNSMNA 120 GNQVMVGGPA PFPAADLNST NPSTWPPQNS VDGGFWAPVM EAVRFPAEER SMQRASPSDV 180 GELQALALRM TKPEPRF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-36 | 3 | 119 | 5 | 120 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-36 | 3 | 119 | 5 | 120 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019188308.1 | 1e-100 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 1e-52 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A4D9BB59 | 4e-58 | A0A4D9BB59_SALSN; Uncharacterized protein | ||||
TrEMBL | A0A4D9BRV2 | 4e-58 | A0A4D9BRV2_SALSN; Uncharacterized protein | ||||
STRING | Gorai.007G144400.1 | 8e-58 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42430.1 | 5e-55 | lateral organ boundaries-domain 16 |