PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc005101.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 368aa    MW: 41305.3 Da    PI: 9.1338
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc005101.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.39.2e-17187282187
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkw 76 
                              +fY +YA ++GF+v +s+ +++ r+ge+ ++ +vCs++g+++++k+           + + +r+r+++ +gC+ak+  k++ dg +
  Itr_sc005101.1_g00001.1 187 EFYFRYACTIGFEVLRSTDSNN-REGEVLRKYLVCSCQGFKQPTKEVclvgdgvgsaSISPKRRRVTNMVGCNAKIIFKLMGDGGY 271
                              6***************998887.8888****************9999********988888999999******************* PP

                     FAR1  77 evtkleleHnH 87 
                               v +le+ H+H
  Itr_sc005101.1_g00001.1 272 SVFSLEERHTH 282
                              *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-14187282IPR004330FAR1 DNA binding domain
PfamPF105511.4E-10291354IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVERIWTGGD EAFLHFVSRI NVIFRLRRVV VAAAMHERRK IKAICAQKKE KKRKRQKMKC  60
TVKVFLVVFA IVEEADKGKG RRGHGDRSGG FLGEMAVCVC ISPVGDVELV VVFVLIVRGW  120
WKYVCGLGVV HVAAFCGDED TAIDSGGSSG CVMDISLGKM KYWMSIYDEA SKPFVGQRFC  180
KLDDGVEFYF RYACTIGFEV LRSTDSNNRE GEVLRKYLVC SCQGFKQPTK EVCLVGDGVG  240
SASISPKRRR VTNMVGCNAK IIFKLMGDGG YSVFSLEERH THWGMCIHVM HNLVFVPFTG  300
MNNHKKSATF VAGLIAKEDV ESYVWLLDNF KRTMGHEPTY IVTDQDPSMR VVVRRRHSVH  360
LCGPPCAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13754RRKIKAICAQKKEKKRKR
25057KKRKRQKM
3246250KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019172923.13e-53PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-09FAR1 family protein