PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc004991.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NF-YB | ||||||||
Protein Properties | Length: 159aa MW: 17118.9 Da PI: 4.7309 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 79.4 | 4.8e-25 | 28 | 92 | 28 | 92 |
NF-YB 28 skdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 ++aketvq+cv+efi +vt++a++++++e+rkt+++ddl+wa+ lG+ y+++l+ +++ yr Itr_sc004991.1_g00002.1 28 RDEAKETVQKCVTEFIHYVTAKANERAKQERRKTVTTDDLIWAMRALGLGSYAQELTDFITDYRA 92 689************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.58E-19 | 28 | 93 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.2E-24 | 29 | 95 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.8E-14 | 29 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.2E-6 | 35 | 53 | No hit | No description |
PRINTS | PR00615 | 5.2E-6 | 54 | 72 | No hit | No description |
PRINTS | PR00615 | 5.2E-6 | 73 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MNADDNTNAN MNADNAAAAG YPEIGSDRDE AKETVQKCVT EFIHYVTAKA NERAKQERRK 60 TVTTDDLIWA MRALGLGSYA QELTDFITDY RAKHVHGRAA THLLPPPPVQ QVPFMQGFPV 120 PGFAPGPMND GAGGSASSSS PLGGDYFLDP SYPPTNFDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 9e-18 | 29 | 91 | 34 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019155265.1 | 2e-54 | PREDICTED: nuclear transcription factor Y subunit B-4-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 4e-21 | NF-YB family protein |