PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc004937.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 211aa MW: 22422.8 Da PI: 10.3905 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 29.5 | 2.4e-09 | 148 | 188 | 1 | 42 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 +fY +YA++ GF+vr s+ k+ rngei++r +vCs++g r Itr_sc004937.1_g00002.1 148 QFYMSYARSGGFDVRHSTVKRG-RNGEIVMRYLVCSRQGLRG 188 6****************99887.8999************875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-6 | 148 | 187 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MATGRGGAGR GILVPVPATP TPSPSPPPSP AGKGKNSPSP SPHASVVFCA TPGRSWITVV 60 SAFVSFADVR FLRYSTCGSF YYAALLVSFT GGQSVLGKAY GVLAMVVVTW WYGVVHRCTG 120 ILDTWPSVDE SLLPFVGCWF QTLTAGIQFY MSYARSGGFD VRHSTVKRGR NGEIVMRYLV 180 CSRQGLRGGG RSKPTPVLGD KGGQTHSPFV L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06250.1 | 2e-08 | FAR1-related sequence 7 |