PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004833.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 453aa MW: 50199.9 Da PI: 4.741

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004833.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38	5.5e-12	385	451	3	73
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 Yn+YA ++GFsvr++k+++s+ ++++++++f+Cs+ g++ + k+ +++ rt C+a ++ ++++ Itr_sc004833.1_g00001.1 385 YNDYAFRLGFSVRRDKQRYSDVTKTVKTKKFQCSMAGFKLNLGKD----CYSKVDVRTCCRAFIQFDLDEN 451 **************************************99988....88999********9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF51445	9.66E-85	23	313	IPR017853	Glycoside hydrolase superfamily
Pfam	PF00332	2.0E-110	23	313	IPR000490	Glycoside hydrolase family 17
Gene3D	G3DSA:3.20.20.80	1.1E-111	23	313	IPR013781	Glycoside hydrolase, catalytic domain
PROSITE pattern	PS00587	0	256	269	IPR000490	Glycoside hydrolase family 17
Pfam	PF03101	6.4E-8	385	451	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MAAMFLLGFL MAVLEITGAH ESIGICYGTL GSDLAPAPEV IQLYKTINIT KMRLYNPNAA 60 ALQALRGSNI QLTLGVQNED LMRLASDRSA AYQWVQENVR SYWPEVRFRY IAVGNEISPV 120 KRDTASVADY VLPAIRNIHA AVSSAGLQND IKVSTSVDMT LLSHSFPPSE GRFSDDLGSY 180 VKPIVEFLAN TNSPLLVNIY PYFTHTENPA DVSLPYALFT SPAVEVWDGE FGYRNLFDAM 240 LDATYAAVSR AGGANVEIVV SESGWPSAGG LAATPENAFT YTKNLIRHVK GGTPRRPNKA 300 IEVYLFAMFD ENNIASQDLI FIALHVLDMD EVIAPHELEV TNEINAPQGL EVTNESFLFQ 360 VFSDISNQDL LGLSMSYVDE AYGTYNDYAF RLGFSVRRDK QRYSDVTKTV KTKKFQCSMA 420 GFKLNLGKDC YSKVDVRTCC RAFIQFDLDE NGM

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MAAMFLLGFL MAVLEITGAH ESIGICYGTL GSDLAPAPEV IQLYKTINIT KMRLYNPNAA  60
ALQALRGSNI QLTLGVQNED LMRLASDRSA AYQWVQENVR SYWPEVRFRY IAVGNEISPV  120
KRDTASVADY VLPAIRNIHA AVSSAGLQND IKVSTSVDMT LLSHSFPPSE GRFSDDLGSY  180
VKPIVEFLAN TNSPLLVNIY PYFTHTENPA DVSLPYALFT SPAVEVWDGE FGYRNLFDAM  240
LDATYAAVSR AGGANVEIVV SESGWPSAGG LAATPENAFT YTKNLIRHVK GGTPRRPNKA  300
IEVYLFAMFD ENNIASQDLI FIALHVLDMD EVIAPHELEV TNEINAPQGL EVTNESFLFQ  360
VFSDISNQDL LGLSMSYVDE AYGTYNDYAF RLGFSVRRDK QRYSDVTKTV KTKKFQCSMA  420
GFKLNLGKDC YSKVDVRTCC RAFIQFDLDE NGM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4hpg_A	1e-136	23	312	2	290	Beta-1,3-glucanase
4hpg_B	1e-136	23	312	2	290	Beta-1,3-glucanase
4hpg_C	1e-136	23	312	2	290	Beta-1,3-glucanase
4hpg_D	1e-136	23	312	2	290	Beta-1,3-glucanase
4iis_A	1e-136	23	312	2	290	Beta-1,3-glucanase form 'RRII Gln 2'
4iis_B	1e-136	23	312	2	290	Beta-1,3-glucanase form 'RRII Gln 2'
4iis_C	1e-136	23	312	2	290	Beta-1,3-glucanase form 'RRII Gln 2'
4iis_D	1e-136	23	312	2	290	Beta-1,3-glucanase form 'RRII Gln 2'
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019168066.1	0.0	PREDICTED: lichenase-like
Swissprot	P07979	1e-144	GUB_NICPL; Lichenase
TrEMBL	A0A1U8FWN9	1e-143	A0A1U8FWN9_CAPAN; Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform
TrEMBL	A0A2G2WQZ2	1e-143	A0A2G2WQZ2_CAPBA; Lichenase
TrEMBL	A0A2G3A296	1e-143	A0A2G3A296_CAPAN; lichenase
STRING	VIT_05s0077g01150.t01	1e-140	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-07	FAR1-related sequence 7

Publications ? help Back to Top
Castresana C, et al. Tissue-specific and pathogen-induced regulation of a Nicotiana plumbaginifolia beta-1,3-glucanase gene. Plant Cell, 1990. 2(12): p. 1131-43 [PMID:2152158] De Loose M, et al. Primary structure of a hormonally regulated beta-glucanase of Nicotiana plumbaginifolia. Gene, 1988. 70(1): p. 13-23 [PMID:3240865]