PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004671.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 293aa MW: 33251.6 Da PI: 8.2922

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004671.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.9	9.7e-54	10	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+++yL++++++k++++ ++i+evd+yk++Pw+Lp ++ +e+ewyfF++rd+ky++g r+nra+ sgyWkat Itr_sc004671.1_g00002.1 10 LPPGFRFHPTDEELIMYYLRNQATSKPCPV-SIIPEVDVYKFDPWELPDRAGFGENEWYFFTPRDRKYPNGIRPNRAAVSGYWKAT 94 79**************************.89***********988899**************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk+++s +++ vg+kk Lvfy+g+ pkg+ktdW+mheyrl Itr_sc004671.1_g00002.1 95 GTDKAIYS-GSKYVGVKKALVFYQGKPPKGTKTDWIMHEYRL 135 ****.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-66	7	162	IPR003441	NAC domain
PROSITE profile	PS51005	61.439	10	162	IPR003441	NAC domain
Pfam	PF02365	6.1E-27	11	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MVAKNRSSDL PPGFRFHPTD EELIMYYLRN QATSKPCPVS IIPEVDVYKF DPWELPDRAG 60 FGENEWYFFT PRDRKYPNGI RPNRAAVSGY WKATGTDKAI YSGSKYVGVK KALVFYQGKP 120 PKGTKTDWIM HEYRLSDSRS HPPKQNGSMR LDDWVLCRIY KKKSMGSNRA MEMVKVEEET 180 QLPQVNIATN CEPLIGSGPQ GLILPRPCSL THLLELGYLG SIPQLLGEDD NNNNFHNYPN 240 LDHHQSPFMG SNGNNVPFAL GESTPQHQYS SQSGFSNNQP MPIFVNPVAF QFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-72	10	164	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-72	10	164	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-72	10	164	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-72	10	164	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-72	10	164	20	170	NAC domain-containing protein 19
3swm_B	2e-72	10	164	20	170	NAC domain-containing protein 19
3swm_C	2e-72	10	164	20	170	NAC domain-containing protein 19
3swm_D	2e-72	10	164	20	170	NAC domain-containing protein 19
3swp_A	2e-72	10	164	20	170	NAC domain-containing protein 19
3swp_B	2e-72	10	164	20	170	NAC domain-containing protein 19
3swp_C	2e-72	10	164	20	170	NAC domain-containing protein 19
3swp_D	2e-72	10	164	20	170	NAC domain-containing protein 19
4dul_A	2e-72	10	164	17	167	NAC domain-containing protein 19
4dul_B	2e-72	10	164	17	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170704.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	K4BWV2	1e-131	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A1S4BTM3	1e-140	A0A1S4BTM3_TOBAC; NAC transcription factor 29-like
STRING	XP_009598866.1	1e-141	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-108	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]