PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc004625.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 20694.9 Da PI: 8.2167 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.1 | 1.6e-34 | 9 | 107 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrr+C++dCv+apyf +++ p+ fa++hk+FGasnv+kll +lp ++r a+ s+ eA+ar++dP+yG+v++i +lqq Itr_sc004625.1_g00001.1 9 PCGACKFLRRRCVPDCVFAPYFRSDDgPAIFAAIHKVFGASNVSKLLLQLPVHRRFPAVFSIGIEAQARMEDPIYGCVSHIIALQQ 94 7*********************998889********************************************************** PP DUF260 86 qleqlkaelallk 98 q+ +l+a++ +++ Itr_sc004625.1_g00001.1 95 QVLNLRAQVMEAR 107 *******998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.94 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-34 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MASSGVVSPC GACKFLRRRC VPDCVFAPYF RSDDGPAIFA AIHKVFGASN VSKLLLQLPV 60 HRRFPAVFSI GIEAQARMED PIYGCVSHII ALQQQVLNLR AQVMEARALQ AQYFLNSMNA 120 GNQVMVGGPA PFPAVDLNAT NPSTVDGGFW APEMEAVPFP AEERSMQRAS PSDVGELQAL 180 ALRMTKPKPS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 3 | 119 | 5 | 120 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 3 | 119 | 5 | 120 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019188308.1 | 7e-99 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 1e-50 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A1U8L838 | 3e-55 | A0A1U8L838_GOSHI; LOB domain-containing protein 16-like | ||||
STRING | Gorai.007G144400.1 | 2e-55 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 6e-53 | lateral organ boundaries-domain 16 |