PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004426.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 1310aa MW: 145864 Da PI: 9.1321

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004426.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.9	1.8e-34	213	373	2	128
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 a k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+p i+++tgt++++as+ a++s+s++++ Itr_sc004426.1_g00005.1 213 ASKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKTDGETVQWLLQQAEPTIIAATGTGTIPASALavAAKASVSEQGT- 297 6799*****************************************************************8887544444444442. PP TCP 86 ssg.........................................................kaaksaakskksqksaasalnlakes 114 + + a s Itr_sc004426.1_g00005.1 298 --SvfaslhefagirshwavmgdannlsrpqissaaairshwataiadsgrsatagsilrS---------------------ASVS 360 ..22346667777888888888888888888888888875555555544444444444431.....................3333 PP TCP 115 rakarararertre 128 +ka ++ r+rt+ Itr_sc004426.1_g00005.1 361 ASKAAQH-RQRTAR 373 3332222.232222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52540	5.21E-5	61	194	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF05970	3.1E-37	103	205	IPR010285	DNA helicase Pif1-like
Pfam	PF03634	2.8E-30	218	375	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.707	219	273	IPR017887	Transcription factor TCP subgroup
Hamap	MF_03211	21.447	430	1289	IPR033688	RNA cytidine acetyltransferase NAT10
Pfam	PF08351	5.8E-31	535	629	IPR013562	tRNA(Met) cytidine acetyltransferase TmcA, N-terminal
Pfam	PF05127	6.2E-63	710	907	IPR007807	Helicase domain
Pfam	PF13718	2.3E-57	947	1075	IPR000182	GNAT domain
Pfam	PF13725	9.9E-38	1128	1264	IPR027992	Possible tRNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000723	Biological Process	telomere maintenance
GO:0006281	Biological Process	DNA repair
GO:0016072	Biological Process	rRNA metabolic process
GO:0034470	Biological Process	ncRNA processing
GO:0003678	Molecular Function	DNA helicase activity
GO:0005524	Molecular Function	ATP binding
GO:0008080	Molecular Function	N-acetyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 1310 aa Download sequence Send to blast
MPFGTFLSRM HRFNVDVSCK IQFALMELEN LLFSWGKSLK DFPEMPISDE SSMGLSENML 60 IAEELPYDKE SLKTEHETLV TQLTDEQRNV YDSVMNDIDS NGGGRTTHSR FAIPLSLNED 120 STCNISQGSD LAELIIRSKL IIWNEAPMTH KYCFEALDKT MRDILRFTIP GSAEKTFGGK 180 TLVLVGDFRQ ILPVIPKATR PETNNNNKKL QVASKRSSNK DRHKKVDGRG RRIRMPALCA 240 ARIFQLTREL GHKTDGETVQ WLLQQAEPTI IAATGTGTIP ASALAVAAKA SVSEQGTSVF 300 ASLHEFAGIR SHWAVMGDAN NLSRPQISSA AAIRSHWATA IADSGRSATA GSILRSASVS 360 ASKAAQHRQR TARQQVSSTP FSTSASASTA TTQSAASSSP VSRRNSMSFP IVNCLIAINY 420 IVTVSTTHKR RSSGLSATLP LTASRSQLTH STLLPRLRSL CPRQIVNLHY MVSKALVKSR 480 PTVLWCYKDK LELSSHKKKR KKQLKKLMQR GLLDPERADP FELFVETGGV SYCLYKDSER 540 VLGNTFGMCI LQDFEALTPN LLARTIETVE GGGLIVLLLR SLSSLTSLYT MVMDVHERFR 600 TESHSQTSGR FNERFLLSLA SCKACIVMDD ELNILPISSH MKSIKPVPVQ EDSEGLSEAE 660 RDLKNLKEQL NDDFPAGPLI RKCITLDQGK AVINFLDSIL DKTLRSTVAL LAARGRGKSA 720 ALGLAVAGAI AAGYSNIFVT APSPENLKTL FEFICKGFDM LEYKEHLDYD VVKSTNPEFK 780 KATVRINIYK HHRQTIQYIQ PHEHAKLSQV ELLVVDEAAA IPLPVVKSLL GPYLVFLSST 840 VNGYEGTGRS LSLKLLQQLE EQNHMPSKNA ESSLSGRLFK KIELNESIRY APGDPIESWL 900 NSLLCLDITN FTPSISRLPP PGECDLYYVN RDTLFSYHKE SELFLQRMMA LYVASHYKNS 960 PNDLQLMADA PAHHLFVLLG PVDESKNHLP DILCVVQVCL EGQISRESAM KSLSAGRQPF 1020 GDQIPWKFCQ QFNDSVFPSL SGARIVRIAT HPTAMKLGYG SAAVELLTRI NAMNEHQKKA 1080 TVTIWASIFF IYRGGFRGEH TPRTKEYRNA FEYMKLLRVK KDRWGGAVIM DCVTILAHLY 1140 FSEKLPVSLS YAQASVLLCI GLQDKDVSQI EGEMHLERQQ ILSLFIKTMK KFYKYLYDLA 1200 SKEIDSTVSR LEEMEPHAIS LDDDLNNAAK QVQEEMNAKM DGLLDPDLLQ GYAIVDREAD 1260 FENALQNGGK VHPGGVISVK SNRNKADKGY KGEKKRSKND LSKSSKKRKT

Sequence ? help Back to Top

Protein Sequence Length: 1310 aa Download sequence Send to blast

MPFGTFLSRM HRFNVDVSCK IQFALMELEN LLFSWGKSLK DFPEMPISDE SSMGLSENML  60
IAEELPYDKE SLKTEHETLV TQLTDEQRNV YDSVMNDIDS NGGGRTTHSR FAIPLSLNED  120
STCNISQGSD LAELIIRSKL IIWNEAPMTH KYCFEALDKT MRDILRFTIP GSAEKTFGGK  180
TLVLVGDFRQ ILPVIPKATR PETNNNNKKL QVASKRSSNK DRHKKVDGRG RRIRMPALCA  240
ARIFQLTREL GHKTDGETVQ WLLQQAEPTI IAATGTGTIP ASALAVAAKA SVSEQGTSVF  300
ASLHEFAGIR SHWAVMGDAN NLSRPQISSA AAIRSHWATA IADSGRSATA GSILRSASVS  360
ASKAAQHRQR TARQQVSSTP FSTSASASTA TTQSAASSSP VSRRNSMSFP IVNCLIAINY  420
IVTVSTTHKR RSSGLSATLP LTASRSQLTH STLLPRLRSL CPRQIVNLHY MVSKALVKSR  480
PTVLWCYKDK LELSSHKKKR KKQLKKLMQR GLLDPERADP FELFVETGGV SYCLYKDSER  540
VLGNTFGMCI LQDFEALTPN LLARTIETVE GGGLIVLLLR SLSSLTSLYT MVMDVHERFR  600
TESHSQTSGR FNERFLLSLA SCKACIVMDD ELNILPISSH MKSIKPVPVQ EDSEGLSEAE  660
RDLKNLKEQL NDDFPAGPLI RKCITLDQGK AVINFLDSIL DKTLRSTVAL LAARGRGKSA  720
ALGLAVAGAI AAGYSNIFVT APSPENLKTL FEFICKGFDM LEYKEHLDYD VVKSTNPEFK  780
KATVRINIYK HHRQTIQYIQ PHEHAKLSQV ELLVVDEAAA IPLPVVKSLL GPYLVFLSST  840
VNGYEGTGRS LSLKLLQQLE EQNHMPSKNA ESSLSGRLFK KIELNESIRY APGDPIESWL  900
NSLLCLDITN FTPSISRLPP PGECDLYYVN RDTLFSYHKE SELFLQRMMA LYVASHYKNS  960
PNDLQLMADA PAHHLFVLLG PVDESKNHLP DILCVVQVCL EGQISRESAM KSLSAGRQPF  1020
GDQIPWKFCQ QFNDSVFPSL SGARIVRIAT HPTAMKLGYG SAAVELLTRI NAMNEHQKKA  1080
TVTIWASIFF IYRGGFRGEH TPRTKEYRNA FEYMKLLRVK KDRWGGAVIM DCVTILAHLY  1140
FSEKLPVSLS YAQASVLLCI GLQDKDVSQI EGEMHLERQQ ILSLFIKTMK KFYKYLYDLA  1200
SKEIDSTVSR LEEMEPHAIS LDDDLNNAAK QVQEEMNAKM DGLLDPDLLQ GYAIVDREAD  1260
FENALQNGGK VHPGGVISVK SNRNKADKGY KGEKKRSKND LSKSSKKRKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5jpq_i	0.0	465	1068	38	658	Kre33
5jpq_j	0.0	465	1068	38	658	Kre33
5oql_i	0.0	465	1068	38	658	RNA cytidine acetyltransferase
5oql_j	0.0	465	1068	38	658	RNA cytidine acetyltransferase
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	497	501	KKRKK
2	1293	1308	KKRSKNDLSKSSKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. {ECO:0000255\|HAMAP-Rule:MF_03211}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155279.1	0.0	PREDICTED: RNA cytidine acetyltransferase 1-like
Swissprot	Q9XIK4	0.0	NT101_ARATH; RNA cytidine acetyltransferase 1
TrEMBL	A0A484MSB7	0.0	A0A484MSB7_9ASTE; RNA cytidine acetyltransferase
STRING	XP_010249467.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-29	TCP family protein

Publications ? help Back to Top
Xu R,Zhang S,Huang J,Zheng C Genome-wide comparative in silico analysis of the RNA helicase gene family in Zea mays and Glycine max: a comparison with Arabidopsis and Oryza sativa. PLoS ONE, 2013. 8(11): p. e78982 [PMID:24265739]