PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004224.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family EIL
Protein Properties Length: 657aa    MW: 74405.4 Da    PI: 6.6795
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004224.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN364.23.8e-20507620177278
                              --HHHHHHT.--TT--...----..-GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S CS
                     EIN3 177 kelwwgelg.lskdqg..tppyk..kphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekec 257
                              +  w  el+ +s+++    + yk   p  lk + kv+vL  vi+hms ++++ir+l+rqsk+lq++m+ake  +lls l++ e+ c
  Itr_sc004224.1_g00001.1 507 THCWALELAqTSTSTTleVRNYKwfAPMKLKHVLKVGVLIVVIRHMSSDFAKIRKLVRQSKCLQNRMTAKENLILLSALRRMEASC 592
                              55565555555555555577787556999********************************************************* PP

                              --XXXXXX.......XXXXXXXXXXXXX CS
                     EIN3 258 atvsahss.......slrkqspkvtlsc 278
                               ++   s         +r ++++  +s+
  Itr_sc004224.1_g00001.1 593 SEIGLGSTsealvsvPVRPNKRSSCVSD 620
                              *998875434554443344444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF059702.9E-37252411IPR010285DNA helicase Pif1-like
SuperFamilySSF525402.65E-6319351IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525402.65E-6385426IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF048731.1E-14507587No hitNo description
SuperFamilySSF1167681.7E-15531590IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene3DG3DSA:1.10.3180.106.2E-18532593IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006281Biological ProcessDNA repair
GO:0005634Cellular Componentnucleus
GO:0003678Molecular FunctionDNA helicase activity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
VIHKSYRDAC YEYGLLDDDK EYIDGITNSS YWASASALRR LFATLLSSST ISRPEVIWDA  60
VWEFLAEDAQ FHHRRRMNNL DSDKKQFALV ELEKLLSLWG KSLRDFPQMP LPDETNIGFE  120
DSKTRRPEDS KTRRHEDPKT RRREDTKTWI LGQNREGPRF HNRAIKCDIH KLTKHYLVLF  180
GSSCELKEGK LKNSKVGDLS TYSTISTSEV ERGGVNLEEV EKPTTTKLPG LVIKGACCIE  240
AHQELKTTDL SLEEDKQTVD WFSKWIANIG YGITGVVNNG LSEIDIPPRF LLNCGHDLIA  300
TIVEITFPSA RYGMIDELDL EGRAILSPTL DVVDQINQYM CNMNTAEGRT YLSCDSFCKA  360
ESDGENLSQV NTPEFLNSLR LSGLPNHSLI LKVGAPVMLL RNIDHSLGLC NVSVQHNCSI  420
NHDYGLQCIV YHGPRYNNCN DWATINDSGQ RYKTKGIKIN QQSISFCFKI TSSIILSKNA  480
FHFRFFWCCC WITSSDEVEY DNAWLGTHCW ALELAQTSTS TTLEVRNYKW FAPMKLKHVL  540
KVGVLIVVIR HMSSDFAKIR KLVRQSKCLQ NRMTAKENLI LLSALRRMEA SCSEIGLGST  600
SEALVSVPVR PNKRSSCVSD LNSEECDVNG FDDDVLESAS FRDDQSGNQQ GYKGTGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.11e-14ETHYLENE-INSENSITIVE3-like 1