PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004105.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 150aa    MW: 18084.6 Da    PI: 7.0916
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004105.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.49.9e-1812109190
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev...ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknra..... 77 
                              lp+G+rF Ptdeel+++yL kkv  +++++ +v   i+  ++y+  P++L +++++ +e+ewyfF+++d     +  k r+     
  Itr_sc004105.1_g00001.1  12 LPVGYRFLPTDEELLKHYLIKKVFFRRIPA-NVipdIHADELYSKSPKTLVENLDGkSEREWYFFIHQDDYFYGKIVKDRMvgine 96 
                              799************************999.5503455558*********8555442667******99987776777778646666 PP

                      NAM  78 tksgyWkatgkdk 90 
                              +++g+W++ g+++
  Itr_sc004105.1_g00001.1  97 IQRGFWRSIGEEE 109
                              779*****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-268141IPR003441NAC domain
PROSITE profilePS5100520.92912150IPR003441NAC domain
PfamPF023651.5E-1113135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MANQPRLTAM SLPVGYRFLP TDEELLKHYL IKKVFFRRIP ANVIPDIHAD ELYSKSPKTL  60
VENLDGKSER EWYFFIHQDD YFYGKIVKDR MVGINEIQRG FWRSIGEEET HWRMQEYRLP  120
WEFIATDDQE REKWILGRIT RGQGYNTSHV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019265616.13e-38PREDICTED: NAC domain-containing protein 101-like
TrEMBLA0A314L3Q56e-37A0A314L3Q5_NICAT; Nac domain-containing protein 101
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1616666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-15NAC-domain protein 101