PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004093.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 283aa MW: 31502.2 Da PI: 4.7502

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004093.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.6	3.4e-12	103	177	1	76
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkw 76 ++Yn+ A+++GFsvrk k+++ r++++++++f C+k ++++ +++ ++ t+ t tgC+a+ + +++ ++ Itr_sc004093.1_g00001.1 103 DMYNDLASRMGFSVRKGKQYYFPRTRNVKSKKFHCYKARFKRKPRSA--NKCYTKIDTWTGCNAMCQFDLDSsGKNV 177 58************************************9999888..8999************9999844444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-9	104	175	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MGEMLGRSNL ITDIDLNALI VEDYGSLSPV ECNPPTGVES DSLIVCNARS SCFDGDHDDI 60 LDDCNPSAGG GGTSTDANEE DSSIPANQEL VGHSVYLVEE AFDMYNDLAS RMGFSVRKGK 120 QYYFPRTRNV KSKKFHCYKA RFKRKPRSAN KCYTKIDTWT GCNAMCQFDL DSSGKNVSVD 180 QLTYLKDMKR SGVPLSDGIR FLKHQSGGSP FVGFTASDAY NTMLLDSAKH LDETDSNTLI 240 ENFRKRQLNE SGFFFDFKVD DDARLCSFFL EGCANEVGLF VVW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	RFKRKPR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019175845.1	8e-80	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_019184332.1	2e-82	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14143	2	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-06	FAR1-related sequence 7