PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003896.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 336aa MW: 35216.2 Da PI: 8.7809

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003896.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.7	4.9e-39	69	150	3	83
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 +kk +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ ++s + + Itr_sc003896.1_g00002.1 69 VKKASSKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSLRGGGT 150 79******************************************************************88844444333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.3E-36	73	176	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.9	74	128	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MEFIEPHSSS RNNNGVSSSE HHRPAPPQAQ EAPPSSLQLV SSHQSQPDPP AGQSRAPTHP 60 LLSPPSKLVK KASSKDRHTK VEGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLHQ 120 AEPAIIAATG TGTIPANFST LNVSLRGGGT TVSAPPFIHG GATAATAAML GFHRHEAGSD 180 PKPAPSTFIP APAMWAVAAP AAGNAGNSFW MLPLSGGGTS GTPTSGCVAQ PEQHHLWQYK 240 ASGGGFEFPG GGGARFSPVQ LTPAQPVQQL GLGVSETNLG MLPSPAINAA AYTTKRVDLG 300 MTLEQHQHQH HGRHHNNQNH QPQGSDSGGE NPKDSE

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157694.1	1e-146	PREDICTED: transcription factor TCP23-like isoform X2
Swissprot	Q9C518	2e-54	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1U7WCU1	1e-105	A0A1U7WCU1_NICSY; transcription factor TCP23-like
STRING	XP_009775051.1	1e-106	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-47	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]