PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc003718.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 18821.6 Da PI: 9.4995 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 53.2 | 8.8e-17 | 108 | 166 | 29 | 87 |
DUF260 29 kfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 ++ +hk+FGas v+kll +lp ++r a+ s+ eA+ar++dP+yG+v++i +lqqql Itr_sc003718.1_g00001.1 108 TTSTIHKVFGASSVSKLLLQLPVQQRFPAVFSIGIEAQARMEDPIYGCVSHIIALQQQL 166 56789****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.627 | 77 | 170 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-15 | 109 | 166 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 170 aa Download sequence Send to blast |
MASGADSPYG ACKFLRWSTK RQFEISSTET RTNDLPSKGG HYMPIEHKIA MASGAGSPYG 60 RMQIPLPELR SRLDSVSNLP SHENDQSQFI LPNAYLNLSP SLPTLLPTTS TIHKVFGASS 120 VSKLLLQLPV QQRFPAVFSI GIEAQARMED PIYGCVSHII ALQQQLPWRR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-14 | 110 | 166 | 41 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-14 | 110 | 166 | 41 | 97 | LOB family transfactor Ramosa2.1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42430.1 | 3e-22 | lateral organ boundaries-domain 16 |