PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003700.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 186aa MW: 20822.9 Da PI: 7.9957 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.3 | 6.2e-19 | 26 | 74 | 2 | 51 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkv 51 pGfrFhPtdeelv +yL+++ve+k++++ e ik+vdiyk++PwdLp++ Itr_sc003700.1_g00004.1 26 LPGFRFHPTDEELVGFYLRRRVENKRISI-ELIKQVDIYKHDPWDLPRQP 74 69***************************.89**************9532 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-18 | 24 | 110 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 16.23 | 25 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-8 | 27 | 68 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MEAKKMVVAV AAAAAVEKDE DEEVILPGFR FHPTDEELVG FYLRRRVENK RISIELIKQV 60 DIYKHDPWDL PRQPEWQDQD ARGREDHRAR VPPCGPLPAR ITGRGFTHIL GRGVRFASIN 120 PILMVISTYM QDSVAWWQSG SPITMQSGSF KRRLSSHGQG CQPLQAIIVG DASVCVASPP 180 PCTVHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-15 | 17 | 111 | 6 | 100 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019193017.1 | 7e-34 | PREDICTED: transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 4e-27 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | E0CU17 | 9e-29 | E0CU17_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0028g00860.t01 | 1e-29 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16497 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-27 | NAC domain containing protein 42 |