PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003693.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 297aa    MW: 33049.9 Da    PI: 4.7779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003693.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l+  +   G  +W+++++  g++R++k+c++rw +yl
  Itr_sc003693.1_g00003.1 14 KGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                             79********************************************97 PP
2Myb_DNA-binding50.25.8e-1671111547
                              -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +  E++l +d+++ lG++ W++Ia++++ gRt++++k++w+++
  Itr_sc003693.1_g00003.1  71 SDAEEQLVIDLHAHLGNR-WSKIASRLP-GRTDNEIKNHWNTH 111
                              778***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-21562IPR009057Homeodomain-like
PROSITE profilePS5129413.923961IPR017930Myb domain
SuperFamilySSF466894.08E-2611108IPR009057Homeodomain-like
SMARTSM007171.5E-121363IPR001005SANT/Myb domain
PfamPF002491.4E-141461IPR001005SANT/Myb domain
CDDcd001671.75E-91661No hitNo description
PROSITE profilePS5129427.17162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2463116IPR009057Homeodomain-like
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
CDDcd001671.07E-1171112No hitNo description
PfamPF002494.2E-1471111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLISFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL SDAEEQLVID LHAHLGNRWS KIASRLPGRT DNEIKNHWNT HIKKKLLKMG  120
INPVTHEPLN KEETKPTSDD QSSTLPESDQ KNGQQQVQVV PQSTTQVTTS EEQSSSCSPT  180
ENSSSSTATT TTEVVVVLDA VGGGDDEDPL LSSLLENHAP ILPDAAQWDL PLPPDNQPPL  240
IFDENHDLGM PTLLDDNFGW LFNCQDFGIQ DFGFDCLNDP EMHIFDTVDS AGNDHNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179239.11e-173PREDICTED: protein ODORANT1-like
SwissprotQ50EX61e-118ODO1_PETHY; Protein ODORANT1
TrEMBLA0A328DJG61e-126A0A328DJG6_9ASTE; Uncharacterized protein
STRINGXP_009788709.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-88myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]