PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003485.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 679aa MW: 77944.8 Da PI: 8.0105

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003485.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.1	5.3e-22	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 +fY+e+Ak++GFs+r+++++ + + t+r fvC + gk+ + +++k +r+r+++r+gC+a ++++k++ +w+vt ++ Itr_sc003485.1_g00007.1 62 EFYSEFAKRCGFSIRRHRTEGKeGVGKGLTRRYFVCHRAGKTPVKPANENKPQRNRKSSRCGCQAYMRISKNSdlgLPEWRVTGFV 147 6************9998876356667999*************99******************9765579*** PP FAR1 83 leHnHela 90 ++HnHel Itr_sc003485.1_g00007.1 148 NHHNHELL 155 ****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-18	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-19	278	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.483	556	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.5E-7	562	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-5	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MSGEAGNMML VYGDPSDQRS FSLDDTSSTE ESPEQTRLSL ETTNESIPYM GQRFPTHDAA 60 YEFYSEFAKR CGFSIRRHRT EGKEGVGKGL TRRYFVCHRA GKTPVKPANE NKPQRNRKSS 120 RCGCQAYMRI SKNSDLGLPE WRVTGFVNHH NHELLEPNQV RFLPAYRTIS DADKSRILMF 180 AKTGISVQQM MRLLELEKCV EPGYLPFTEK DVRNLLQSFR KVDPEDESID LLRMCRNIKE 240 RDPNFKYDFT LDCNNRLENI AWSYASSIQS YEIFGDAVVF DTTHCLTAFD MPMGIWVGVN 300 NYGMPCFFGC VLLREENVRS FSWALKAFLG FMNGKAPQTV LTDQNMCLKE AIAVEMPATK 360 HALCIWLIVA KFPSWFNAVL GERYNEWKAE FYRLYNLESI DDFELGWRDM VNLFGLHNNR 420 HIATLFSLRS LWALPYLRSH FFAGMVTAGH SKSINAFIQR FLSAQTRLAH FVEQVAVAVD 480 FKDQTGEQQT MQQNLQNICL KTGAPMESHA ATVLTPFAFS KLQEQLVLAA HYASFQLDDG 540 FLVRHHTKAE GGRKVYWVPR EGIIGCSCQL FEFSGILCRH ALRVLSTGNC FQIPERYLPF 600 RWRRISLPSS KAPQTNQNDH TERVQSLQSL VSNLVTESAK SKERLDFASE QISILLTQIR 660 EQPVYSQEVR ELSSIQRNL

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MSGEAGNMML VYGDPSDQRS FSLDDTSSTE ESPEQTRLSL ETTNESIPYM GQRFPTHDAA  60
YEFYSEFAKR CGFSIRRHRT EGKEGVGKGL TRRYFVCHRA GKTPVKPANE NKPQRNRKSS  120
RCGCQAYMRI SKNSDLGLPE WRVTGFVNHH NHELLEPNQV RFLPAYRTIS DADKSRILMF  180
AKTGISVQQM MRLLELEKCV EPGYLPFTEK DVRNLLQSFR KVDPEDESID LLRMCRNIKE  240
RDPNFKYDFT LDCNNRLENI AWSYASSIQS YEIFGDAVVF DTTHCLTAFD MPMGIWVGVN  300
NYGMPCFFGC VLLREENVRS FSWALKAFLG FMNGKAPQTV LTDQNMCLKE AIAVEMPATK  360
HALCIWLIVA KFPSWFNAVL GERYNEWKAE FYRLYNLESI DDFELGWRDM VNLFGLHNNR  420
HIATLFSLRS LWALPYLRSH FFAGMVTAGH SKSINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQTGEQQT MQQNLQNICL KTGAPMESHA ATVLTPFAFS KLQEQLVLAA HYASFQLDDG  540
FLVRHHTKAE GGRKVYWVPR EGIIGCSCQL FEFSGILCRH ALRVLSTGNC FQIPERYLPF  600
RWRRISLPSS KAPQTNQNDH TERVQSLQSL VSNLVTESAK SKERLDFASE QISILLTQIR  660
EQPVYSQEVR ELSSIQRNL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019179464.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A3Q7EPN6	0.0	A0A3Q7EPN6_SOLLC; Uncharacterized protein
STRING	XP_009765793.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]