PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003377.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Nin-like | ||||||||
Protein Properties | Length: 307aa MW: 34094.9 Da PI: 6.4189 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 76.7 | 2.7e-24 | 94 | 142 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++s e++s+yF++p++ AA +Lg++ T+LK CR+ GI+RWP+Rk+ksl Itr_sc003377.1_g00006.1 94 TLSKEVISSYFHMPLQHAAEKLGIGETALKEMCRKVGIPRWPYRKLKSL 142 7899*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.383 | 77 | 162 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.4E-22 | 94 | 142 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MAAHSSSSFS NLIDCPVLGY SIWDRHFFTQ ESYFEATPTT EPLNDSLSPT LPTNTEQSCG 60 DNTSVESSEA GEVTIMEDTS HKRGGRGKRP VPSTLSKEVI SSYFHMPLQH AAEKLGIGET 120 ALKEMCRKVG IPRWPYRKLK SLEALMKNVQ DFEENLEDAV TKATVRVLKN RHKLLCDMPG 180 LELDPETLCL RNAYFKLNHM KRKLRKMAMP PSPSISSSCT LFSAAGIDTE DMDIPLIKLL 240 RPRRLKANGA PCHLATPACQ QGAEETDRVT SEGTSLRQIP VDHVYLESAA NLSAMAEVDY 300 LVDSYCP |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4274 | 21 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 1e-25 | RWP-RK domain-containing protein |