PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003356.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 756aa    MW: 83170 Da    PI: 9.2637
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003356.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07657706147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Itr_sc003356.1_g00002.1 657 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 706
                              678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.987652711IPR017930Myb domain
SMARTSM007173.5E-7656709IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-10657707IPR009057Homeodomain-like
CDDcd116605.82E-17658708No hitNo description
SuperFamilySSF466892.06E-15658739IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MISESVAKRL DYGFNGYQVP PIPRATRSAR RRSVIWRKAD DNQMCAFELL ASVAGKLLLE  60
GESSPSSKDK SHANENTSPE KVNIKKEKQN EDRTMLETSC NRGSKERNFF ISELVSQAPV  120
LNNCLSELPH SQNGILSGPA SVITTSDFSD TIGLVEQLGN DGSKLELGGL NRTVDLDESG  180
SKVFSSSKSG AAVGKSGGNR LSDNVKVSTD SKDGICSSEF PVLGDRKPST LVCSDNSVEL  240
TLSRNHIPCG SLPPANRDDV KLGSRDDDEN PLGCTLRSTS NKAFRPSLRM RDQRVKKLLA  300
SKYWELNSKS SDKQHLDAVA ISTDVESSTK HQRSLRDYPY KKRKLYDCGL VGNSDGGKSS  360
DGMCTSLTRG YNGVKSSNGL CTTPNEGYNG DASRYCLTLP TGSFLYFIHN RADRPPAHST  420
TGPSTFSVDE QASFRPGDPH VKLKIKSFRV PELFIEIPET ATIGSLKACT QTLIPLYRLY  480
MFPLLFPEQQ FRFMEAVTRI LGDGLCVGVV FQGKKVGDDK KTLLQTGISH NNKLDALGFT  540
LEPNPSQDPP LLCSEGHTQP YCDTPKPLKR YPAAHSIAHA VVQAGPANIL NDQAGTNLIN  600
FIGSSHDLAP SRADVSLEKH AADSRALVAV PAVNLETFAA VPVRKPKRSE AARRRIRRPF  660
SVTEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA KISPQQRRGE  720
PVPQELLDRV LTAHAYWSQQ QAKQQMKHHP ETCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-546447474107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334343LRDYPYKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159830.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLM0ZPY10.0M0ZPY1_SOLTU; Uncharacterized protein
STRINGSolyc06g005590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-118TRF-like 2