PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003319.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | TCP | ||||||||
Protein Properties | Length: 256aa MW: 26594.1 Da PI: 8.997 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.4 | 1.3e-34 | 51 | 123 | 4 | 74 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 + +++hTkv+gR+RRvR++a+caar+F+L++eLG+ + ++ti+WLl+qa+pai+++tgt++++as++ + Itr_sc003319.1_g00001.1 51 RNAAVKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRTEGETIQWLLRQAEPAIIAATGTGTTPASAVttT 123 566679********************************************************99999777432 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-28 | 55 | 120 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.955 | 55 | 109 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGSENVFSGF SVSDSQSPNA LSPTSTPAQT PLYRLVGGAA AADNGEASRG RNAAVKDRHT 60 KVNGRGRRVR MPALCAARIF QLTRELGHRT EGETIQWLLR QAEPAIIAAT GTGTTPASAV 120 TTTPSGAVIA SGPPPSAMAP LAGMSRVLPL PIPSPSVVGA SRYVAAAAPT NRVHQLSVPC 180 LNNGGGRFMQ AAAAAAEMGL FSITRPCCRF DLIQPSSAAA QHDFSGNVPS FTSMLMQTSP 240 TMNEVEGEHY EDVGKH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019156215.1 | 1e-133 | PREDICTED: transcription factor PCF2 | ||||
TrEMBL | A0A484MU79 | 4e-67 | A0A484MU79_9ASTE; Uncharacterized protein | ||||
STRING | Solyc09g008030.1.1 | 1e-40 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-25 | TCP family protein |