PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003311.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 697aa    MW: 77002.5 Da    PI: 9.6247
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003311.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07590639147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
  Itr_sc003311.1_g00001.1 590 RRPFSVTEVEALVEAVEQLGTGRWRDVKMRAFdnvDHRTYVDLKDKWKTL 639
                              678999********************9766667999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.5E-7391480IPR029071Ubiquitin-related domain
CDDcd017690.00227400466No hitNo description
PROSITE profilePS5129417.326585644IPR017930Myb domain
SMARTSM007171.9E-7589642IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-10590640IPR009057Homeodomain-like
CDDcd116608.74E-17591641No hitNo description
SuperFamilySSF466897.1E-16591672IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MVMKKRLEYG FDGYRFPVVP RAPRSSRRRH TGNVDDKQIC AFELLAAVAG KLLLESESSV  60
SSNAAEGKDG PAIQRDVTEP GNFQEDKALK PECLDRGSCV ESAFLPKGAI QEQKIKHGNG  120
GSSYSENSSV SESTFTEFSG KVYSGVKLES VKNLDAEGNF NSEVEGRPSN LGDLCSVKIN  180
NATQKQLADD GMQAGDVTMA SGSSVKDPIK NYLTTTNKNT LNNSDRSVQM PLYRDPVPSA  240
SFAKHRRNDV KLGIRDDDEN SFRCFKRSTK IRAFRHRSHN GYRRIRKLLT SRRWQVAPGL  300
KECEFFNSYK AMRPYGNRKR TYAHQRRHFE KAPKRRKLCS RSFAIAYDQE VSSESISNLP  360
EKQTNGDNYG SALIAHRGIG TTASVKGLQN PKDPNVKFSI KSFRVPELYI EVPETTTVGS  420
LKKTVMDAVT TILGGSLRVG VILHGNKVRD DNRTLEQAGI SHNGDLDALG FTLEPNSSQV  480
SSSLPPKDPP ASLLAAAEKE LSGNPASPNL DLALLAIPPD PSPEFKLDKH DESNHESVPL  540
LEGPTDASRN VVGPESQALV AVEQTNAEPL AVVPMNQKSR RAEFSQRRTR RPFSVTEVEA  600
LVEAVEQLGT GRWRDVKMRA FDNVDHRTYV DLKDKWKTLV HTASIAPQQR RGEPVPQELL  660
DRVLAAHSFW SLQQAKQNGK AEAVVRIGDA PAQVVEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-605746971121Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317336RKRTYAHQRRHFEKAPKRRK
2330336KAPKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171935.10.0PREDICTED: telomere repeat-binding protein 2-like
RefseqXP_019171936.10.0PREDICTED: telomere repeat-binding protein 2-like
TrEMBLA0A328EAK60.0A0A328EAK6_9ASTE; Uncharacterized protein
STRINGXP_009783131.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-91TRF-like 2