PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003143.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WOX
Protein Properties Length: 145aa    MW: 16805.9 Da    PI: 9.8623
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003143.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.4e-181070357
                             --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             +R+++++eql++L +l+++   r+ps++e+  ++++l    +++e++V++WFqN++ +e++
  Itr_sc003143.1_g00004.1 10 TRWNPKSEQLQILRDLYYNhgMRNPSRQEIMGITQRLsqygKIEEKNVFYWFQNQKGRERQ 70
                             8*****************8789************************************996 PP
2Wus_type_Homeobox101.36.7e-33971364
        Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                             +tRW+P++eQ++iL++ly+ +G+r+P+++ei  it++L++yGkie+kNVfyWFQN+k Rerq+
  Itr_sc003143.1_g00004.1  9 STRWNPKSEQLQILRDLYYnHGMRNPSRQEIMGITQRLSQYGKIEEKNVFYWFQNQKGRERQQ 71
                             79***************9769****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0053775IPR001356Homeobox domain
PfamPF000461.3E-151070IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-71071IPR009057Homeodomain-like
SuperFamilySSF466892.82E-121075IPR009057Homeodomain-like
CDDcd000864.71E-51072No hitNo description
PROSITE profilePS5007110.1551671IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDAEHIYVST RWNPKSEQLQ ILRDLYYNHG MRNPSRQEIM GITQRLSQYG KIEEKNVFYW  60
FQNQKGRERQ QRKRLATLAA EAATPHDLRQ QATVGGSSEH ATKHPMLETL PLFPMHSDRV  120
GKSKADTNNS EPSLELTLRP YSPTP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84VT71e-24WUS_SOLLC; Protein WUSCHEL
TrEMBLS8CT842e-24S8CT84_9LAMI; Uncharacterized protein
STRINGGSMUA_Achr7P07430_0018e-25(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-25WOX family protein
Publications ? help Back to Top
  1. Reinhardt D,Frenz M,Mandel T,Kuhlemeier C
    Microsurgical and laser ablation analysis of interactions between the zones and layers of the tomato shoot apical meristem.
    Development, 2003. 130(17): p. 4073-83
    [PMID:12874128]