PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003138.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 179aa MW: 19760 Da PI: 8.5425 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 57.5 | 4.6e-18 | 84 | 179 | 1 | 87 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkw 76 kfY +YA +vGF+vr+s+ +k+ r+g + ++ +vCs++ +++++k+ + + +r+r+++++gC+ak+ k+ dg + Itr_sc003138.1_g00005.1 84 KFYVRYACTVGFEVRRSTDSKN-REGDVLRKYLVCSCQVFKQPTKEVclvgdgvggvSISPKRRRVTNKVGCNAKIIFKLIGDGGY 168 6*****************9999.6677****************9999*********99999999********************** PP FAR1 77 evtkleleHnH 87 v +le+ H+H Itr_sc003138.1_g00005.1 169 SVFSLEERHTH 179 **********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.5E-15 | 84 | 179 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MCTWAVYGCS IVKLIVLLLV FNCPIGHVAA AFCSDENAAI DSGGSSGCVM DISPGKMKYW 60 MPIYDEASKP FVGQRFCKLD DCVKFYVRYA CTVGFEVRRS TDSKNREGDV LRKYLVCSCQ 120 VFKQPTKEVC LVGDGVGGVS ISPKRRRVTN KVGCNAKIIF KLIGDGGYSV FSLEERHTH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 147 | KRRRV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019172923.1 | 4e-57 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 4e-09 | FAR1 family protein |