PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003071.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 365aa    MW: 38727.4 Da    PI: 8.6325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003071.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-102462851255
                              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Itr_sc003071.1_g00001.1 246 RRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 285
                              9*****************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.331234284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-7236290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7246285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.24E-10246289No hitNo description
Gene3DG3DSA:4.10.280.104.9E-14247289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-12247292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MQPESGGGGG GSGGSEPSRG AGLTRFRSAP ATWLEALLDS DTENDVVLDP PPILPSSSKP  60
PPHPHSQPLP TPSAQLKQPS VGGSGSRYAA DLGLFESGGG GGEAASGLSN FVRQNSSPAE  120
FLSQISSDIF FPGFGAPPSY DYLSSPIDVA QSAKRPREAD SQSPSAKLSS PLKGEQSGRL  180
RSAGGSLDAE MEKMMEDLVP CRVRAKRGCA THPRSIAERV LLSSHSPPLT HTLLENADEG  240
ISTAVRRTRI SDRIRKLQEL VPNMDKQTNT ADMLEEAVEY VKFLQKQIQG AGHGPLLASA  300
QQSPIPAPAT VVVGTRTCDW IPLVTTPKAI AREARNSRSI RRNALAPRTS NEREREGLLR  360
VSCSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151807.11e-142PREDICTED: transcription factor bHLH81-like
TrEMBLA0A484L5N61e-134A0A484L5N6_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000804181e-103(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.16e-56bHLH family protein