PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002978.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family E2F/DP
Protein Properties Length: 270aa    MW: 30186.1 Da    PI: 6.5144
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002978.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.35.3e-2349128471
                  E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                               +Lr+++++   ++ k+++ g++t++eva+e++++               d+kn+rRR+YD+lNVL+al++++k +++ei+wkg
  Itr_sc002978.1_g00002.1  49 GGLRQYSNM---VCMKVKDkGRTTYSEVADEIIADfratevnssvsmnesDEKNIRRRVYDVLNVLMALDIVTK-DRKEIQWKG 128
                              699*****9...****9999******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.4E-845265IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.108.0E-3545132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-2348128IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.22E-1749129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.7E-2050128IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011385.5E-40135268IPR014889Transcription factor DP, C-terminal
CDDcd144587.85E-32135236IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.73E-35136257No hitNo description
PfamPF087812.8E-32136253IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDGKIHMQHS KGQYPFLDAV CYADNNEDID PSGPNSVEKT KRGSKVVGGG LRQYSNMVCM  60
KVKDKGRTTY SEVADEIIAD FRATEVNSSV SMNESDEKNI RRRVYDVLNV LMALDIVTKD  120
RKEIQWKGLP TSAGVDMDEI KGMRDKLKDE INKKAAYLKD LEDQIAGHQA LICRNQQLYD  180
SKNGPPKGFP LPFLVVKTAP HATVEIEISE DMQLVHFDFN STPFSLHDDA YVLKLMRHYR  240
HLEGAQASQT SAVLSSSPCS DVDSSVGGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2639134194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161319.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY25e-80DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A3Q7IU121e-102A0A3Q7IU12_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000230361e-102(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1488399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.35e-82Transcription factor DP