PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002559.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 791aa    MW: 88148.7 Da    PI: 9.4252
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002559.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.7e-07177197526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               Cr+fa  G C+ G+ C+F H+
  Itr_sc002559.1_g00002.1 177 TCRDFAT-GKCRKGSECRFLHP 197
                              5******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-5172198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112172199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-6175197IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4178197IPR000571Zinc finger, CCCH-type
SMARTSM003560.13255281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.765255282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094306332IPR000571Zinc finger, CCCH-type
SMARTSM003560.017307331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MGESVRKRKS LWDAEEDTSL RVESNDKNAW SGKGQYPSYQ ENSASKTDFS SKNHSGCDLS  60
PQNVPQESHR SSQHGERVPE TEEADRKKDL YRSRRHPARD RSRSRGRGEG RSRSPGRRRD  120
RARYPVQKRS GSRSRSRSRD RGNMKARSRS RSPPHNYKSD PHGWGDRRNG SRISSQTCRD  180
FATGKCRKGS ECRFLHPDNL KSTDGFQLED DLAETLGNRL EHGHVSRSAN SEGHEIRDEL  240
PDAYDIEHDQ TRKRNRVMIT CKDFIKGKCH WGASCKFSHV GVSSDNYERG VKNASLNYVQ  300
EREPTKSTKQ LCKYFAAGKC FHENCKFSHD GPTPSYIETR PSDNIGGGRL DGKNKHPSGP  360
NWDDAQRDSN LSQIGIHPKR FMASPNGRDT NTSGSVLEKL TDSEGQTATS IASQSQSLNG  420
SSHVYEQGKI QEASGVNLSN TVMKPEMSLN SFVMPYTFED KGKFGPNALH DVKSSRNSVH  480
PVLLPGQSYE VGENMTVSSE PSFFTSSNQS RPRNQKEAAS STDTPSMEFP HNLSTAALVK  540
LASQMKNSST SSTVTFGNES AKPELHLEVV PSDPSSALPM FSAKPNPDQY HAPGDSVELC  600
TSGNFMMPLV NAPRLDEQKT KVPLEKLNLS AVNPGAGEKN DVGGSDVMRN KDPLLKRPEV  660
CTDLEVNGNN KIVANKCDDG QENKHSDNVE VHGKAEEVSG NKDDKAIRLF KNALIEFVKE  720
ILKPTWKEGR MSREVHKTIV KKVVDKVTST IQGDHIPKTQ EKIEQYLSYS KPKLSKLVQA  780
YVERCLKAPD A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RSRSRSRDR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174346.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-12C3H family protein