PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002552.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 379aa MW: 42688.9 Da PI: 4.4393 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.9e-20 | 124 | 174 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +g+W+AeIrdp+ r r +lg+++taeeAa +++a++kl+g+ Itr_sc002552.1_g00001.1 124 KFRGVRQRP-WGKWAAEIRDPT----RgVRLWLGTYDTAEEAAMVYDNAALKLRGP 174 89*******.**********84....35**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-30 | 123 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.32E-33 | 124 | 180 | No hit | No description |
PROSITE profile | PS51032 | 23.788 | 124 | 181 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-13 | 124 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 124 | 180 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-37 | 124 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-10 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-10 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MDPFTFCPIK YTEHRHEIKK FAKPSAALNP GMFSEGRKRR PVNGSTGPKK VRITVTDPDA 60 TDTSSDEEEV FERRRVRRYI HEINIETAVN IDAVKKRPVA EALQGKQKQK QVRVKEAAPN 120 GVRKFRGVRQ RPWGKWAAEI RDPTRGVRLW LGTYDTAEEA AMVYDNAALK LRGPDALTNF 180 VKPPAIETPE VNAASSSGYD SSDESRHLPS PTSVLRFRTT KCSEESEPHC KSESEPVHSD 240 CSVHDCVESD QAVQQSDPVQ SDQAVQQSDP VQSDVADLPG DINDDIPFID NFFDTQSPKQ 300 TLLDDSSSNF VTTDFDTTSD FWLPDFGNDL FRDDFGFCND FGDFDKFDDS FQDLSTLNVS 360 DYFEDDVDEF SLVDSFLVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 123 | 180 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-21 | 123 | 180 | 4 | 62 | ATERF1 |
3gcc_A | 6e-21 | 123 | 180 | 4 | 62 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU171988 | 9e-47 | GU171988.1 Ipomoea batatas microsatellite Stv_Ipb_1659 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019177798.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A314L4X8 | 1e-119 | A0A314L4X8_NICAT; Ethylene-responsive transcription factor crf4 | ||||
STRING | XP_009596437.1 | 1e-115 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 6e-42 | cytokinin response factor 4 |