PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002525.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 272aa    MW: 30211.7 Da    PI: 7.8505
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002525.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000147092123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C + F++   L  H+++H
  Itr_sc002525.1_g00004.1 70 YTCSFCRREFRSAQALGGHMNVH 92
                             9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-66796No hitNo description
SMARTSM003550.00617092IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-57093IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2197097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEQARCWVWP KRKLDLMAPS HHQNHHHNLH PLFAYSANPS SNGGDSWEEQ AFAEDAAGAL  60
GGCVWPPRSY TCSFCRREFR SAQALGGHMN VHRRDRARLK QSSPSVEADS GGVPNANNSP  120
KYPPPAAGGG GHDSDHWIRV SNSAPEKYKN EGLSAWSNLS VASRRFCLTS DVKNGEKKEL  180
KVLLDLTKST AIDDEAENNL KIVDSSSCRD HETRMLLTTR RPTDEDVSSC KRRKMDANPT  240
FGLFPKPDFG ILANPVEELD LELRLGDPPK VK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-136592229superman protein
2l1o_A4e-136592229Transcriptional regulator SUPERMAN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.15e-32zinc-finger protein 10