PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002481.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 128aa MW: 13759.5 Da PI: 8.9064

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002481.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.8	2.4e-07	24	46	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg+ F+r+ L H+r+H Itr_sc002481.1_g00006.1 24 HICKVCGRQFNRRQALSGHMRLH 46 68*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.1E-7	21	49	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.9E-6	24	46	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	7.9E-4	24	46	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	4.1E-7	24	46	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.219	24	46	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	26	46	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MSRNNANGSS SFNSPPPAQP QQNHICKVCG RQFNRRQALS GHMRLHDNRG WRSVCPHFFN 60 RDYLANVPPI LGIAAVGGQV AAAPPPPIAA PPADNAPLAQ ADAAATLPDL NEPRYYHVPD 120 LNFPPPPA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A484NEG6	3e-22	A0A484NEG6_9ASTE; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	5e-06	C2H2-like zinc finger protein