PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002366.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 303aa    MW: 34968.3 Da    PI: 7.1685
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002366.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.5e-50281612128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                               pGfrFhPtdeelv +yLk+kve+++l++ e ik++diyk++PwdLpk+ + +++ewyfF+kr +ky+++ r+nr+t sg+Wkatg
  Itr_sc002366.1_g00001.1  28 LPGFRFHPTDEELVGFYLKRKVEKRELSM-ELIKQIDIYKYDPWDLPKSSHVGDTEWYFFCKRGRKYRNSIRPNRVTGSGFWKATG 112
                              69***************************.89***************988899********************************* PP

                      NAM  88 kdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               d++++s+        +++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Itr_sc002366.1_g00001.1 113 IDRPIYSSsapvagenHRHCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 161
                              *******9888876655556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5425191IPR003441NAC domain
PROSITE profilePS5100552.34727192IPR003441NAC domain
PfamPF023651.7E-2529161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MADDAENLSR SVITKVDEEE DDDVPVILPG FRFHPTDEEL VGFYLKRKVE KRELSMELIK  60
QIDIYKYDPW DLPKSSHVGD TEWYFFCKRG RKYRNSIRPN RVTGSGFWKA TGIDRPIYSS  120
SAPVAGENHR HCIGLKKSLV YYRGSAGKGT KTDWMMHEFR LPADHDKSTK HIDIKSIAQE  180
AEVWTLCRIL KRSVSHKRDW KEISAKKSNN NHYANVNSTT YNMESCCDDQ KNNYISFNAP  240
LMANHTTNNV CHHLLTAQLN PISQPQFLSY SATANAYYSP VVAAPDIDEL LKHEDWDEIT  300
QLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-502919819171NO APICAL MERISTEM PROTEIN
1ut4_B8e-502919819171NO APICAL MERISTEM PROTEIN
1ut7_A8e-502919819171NO APICAL MERISTEM PROTEIN
1ut7_B8e-502919819171NO APICAL MERISTEM PROTEIN
3swm_A7e-502919822174NAC domain-containing protein 19
3swm_B7e-502919822174NAC domain-containing protein 19
3swm_C7e-502919822174NAC domain-containing protein 19
3swm_D7e-502919822174NAC domain-containing protein 19
3swp_A7e-502919822174NAC domain-containing protein 19
3swp_B7e-502919822174NAC domain-containing protein 19
3swp_C7e-502919822174NAC domain-containing protein 19
3swp_D7e-502919822174NAC domain-containing protein 19
4dul_A8e-502919819171NAC domain-containing protein 19
4dul_B8e-502919819171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196379.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2
SwissprotQ9SK555e-85NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1S4DPZ31e-122A0A1S4DPZ3_TOBAC; transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A1U7WNA21e-122A0A1U7WNA2_NICSY; transcription factor JUNGBRUNNEN 1-like
STRINGXP_009778771.11e-123(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-85NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]