PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002229.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 95aa MW: 10236 Da PI: 8.6252 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.2 | 9.3e-32 | 9 | 95 | 1 | 86 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C Ck+lrr+C ++Cv+apyf++++ p+ fa++hk+FGasnv+kll +lp ++r a+ s+ eA+ar++dP+yG+v++i +lq+q Itr_sc002229.1_g00001.1 9 PCGTCKFLRRRCIPGCVFAPYFCSDHgPAIFAAIHKVFGASNVSKLLLQLPVQQRFPAVFSIGIEAQARMEDPIYGCVSHIIALQHQ 95 7***********************9989********************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.203 | 8 | 95 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-31 | 9 | 95 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MASSGAGSPC GTCKFLRRRC IPGCVFAPYF CSDHGPAIFA AIHKVFGASN VSKLLLQLPV 60 QQRFPAVFSI GIEAQARMED PIYGCVSHII ALQHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 3 | 95 | 5 | 96 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 3 | 95 | 5 | 96 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631}. | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019188309.1 | 5e-54 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB6 | 3e-41 | LBD17_ARATH; LOB domain-containing protein 17 | ||||
Swissprot | Q9SLB7 | 2e-41 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A072U455 | 3e-43 | A0A072U455_MEDTR; LOB domain protein | ||||
TrEMBL | A0A2K3LEZ1 | 1e-43 | A0A2K3LEZ1_TRIPR; LOB domain-containing protein 16-like | ||||
TrEMBL | A0A2Z6MIP7 | 3e-43 | A0A2Z6MIP7_TRISU; Uncharacterized protein | ||||
STRING | XP_010679216.1 | 2e-43 | (Beta vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 9e-44 | lateral organ boundaries-domain 16 |