PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002203.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 346aa    MW: 39041.9 Da    PI: 5.1422
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002203.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.66.1e-131661146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                             +g+W  eEde l++ v+++G+++W++I ++  + Rt+k+c++rw +
  Itr_sc002203.1_g00003.1 16 KGPWKVEEDEVLLNHVNKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 61
                             79*************************8887799**********87 PP
2Myb_DNA-binding43.66.7e-1472111344
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                              ++++eE+   +d+ +q+G++ W++Ia +++ gRt++++k++w
  Itr_sc002203.1_g00003.1  72 KFSAEEERVVIDLQAQFGNK-WARIATYLP-GRTDNDVKNFW 111
                              79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.4071167IPR017930Myb domain
SuperFamilySSF466894.49E-2813111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-201464IPR009057Homeodomain-like
SMARTSM007177.7E-111565IPR001005SANT/Myb domain
CDDcd001671.15E-101863No hitNo description
PfamPF139212.2E-111969No hitNo description
Gene3DG3DSA:1.10.10.605.0E-1865117IPR009057Homeodomain-like
PROSITE profilePS5129417.7568119IPR017930Myb domain
SMARTSM007174.4E-1269117IPR001005SANT/Myb domain
PfamPF002491.1E-1172111IPR001005SANT/Myb domain
CDDcd001674.45E-1072111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEGRSWCNGD LGDIKKGPWK VEEDEVLLNH VNKYGPRDWS SIRSKGLLQR TGKSCRLRWV  60
NKLRPNLKNG VKFSAEEERV VIDLQAQFGN KWARIATYLP GRTDNDVKNF WSSRQKRLAR  120
ILHNSTPQSS KSRGDSNSSS SVKEVPALLD VPSLERCISH SGSLHFNAVN LCNVTWTMLC  180
LLDAKELKLE EPKFRSSTNE ECLSKPQSCS SSYIENFEAI PMLDLMTPTS FTFEPNLLHL  240
EYAQCETKPF HGSQPQLPFP QIPQVQTTDF SLPPLEGQDF ASRLGDLNFF DAFGNTSAPE  300
PETSCEGVVK QENDAVINPL SPDSFIDDFS IDMFDHIEPL PSPSDW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271311724126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161076.10.0PREDICTED: transcription factor MYB29-like
TrEMBLA0A068UMH91e-110A0A068UMH9_COFCA; Uncharacterized protein
STRINGXP_009630342.11e-106(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.14e-71MYB family protein