PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc002179.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 167aa MW: 18939.4 Da PI: 10.847 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.8 | 1.2e-22 | 16 | 61 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +ie k+ qvtfskRr g++KKA+EL++LC++e+a+i+fs+ gk + Itr_sc002179.1_g00002.1 16 KIETKTHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPAGKPF 61 699***************************************9965 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.9E-35 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.273 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-28 | 7 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.14E-35 | 8 | 76 | No hit | No description |
PRINTS | PR00404 | 9.9E-20 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-25 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-20 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-20 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 167 aa Download sequence Send to blast |
MAKKPNMGRQ KIKIAKIETK THLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPAGKP 60 FSFGNPNVGP ILDRFLSRNP HPVSGATALH LPEMNLQLTQ MMAASEMEKK RGEMLGRMRT 120 ERRRSRQYWW EAPISELGLP ELQQVMIAMD ELKKSVLQLI MAEFSKP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-16 | 7 | 81 | 1 | 76 | MEF2C |
5f28_B | 7e-16 | 7 | 81 | 1 | 76 | MEF2C |
5f28_C | 7e-16 | 7 | 81 | 1 | 76 | MEF2C |
5f28_D | 7e-16 | 7 | 81 | 1 | 76 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019165300.1 | 3e-95 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 2e-51 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1S3Y9T4 | 2e-68 | A0A1S3Y9T4_TOBAC; agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1U7UZ26 | 1e-68 | A0A1U7UZ26_NICSY; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009761267.1 | 2e-69 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-53 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
---|---|---|---|
|