PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002099.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24342.1 Da PI: 8.9582 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.9 | 2.6e-23 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k qvtfskRr g++KKA+EL++LC++eva+i+fs+ gk++ + Itr_sc002099.1_g00011.1 16 KIEMKNHLQVTFSKRRSGLFKKASELCILCGVEVAIIVFSPAGKVFSF 63 78999999*************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.413 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.8E-33 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-27 | 8 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.89E-34 | 8 | 79 | No hit | No description |
PRINTS | PR00404 | 7.5E-20 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-25 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-20 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-20 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MAKRPSLGRQ KIKIEKIEMK NHLQVTFSKR RSGLFKKASE LCILCGVEVA IIVFSPAGKV 60 FSFGHPNVEL ITDRFLSGNQ HPLSSNNATL QLVEAHRSAT VRELNLQLSQ MMAESEIERK 120 RGEALDEMRK ESRRQHWWEA PVCDLGLPEL RQVRDAMEEL KKNVTAQAEK MNTCTFLGMD 180 GKTVFDHPET KPTRIMVNYT HALHDFGYDL TFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019189897.1 | 1e-142 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 4e-51 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1S3Y9T4 | 3e-97 | A0A1S3Y9T4_TOBAC; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009628464.1 | 2e-97 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-53 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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