PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001950.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 1433aa MW: 163650 Da PI: 9.5337

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001950.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.5	6e-20	1129	1214	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 Yn+YA++vGFsvrk k++++ +++++++tf Csk g +++e+ + ++ r+ C a ++ + +g+w vtk e+ H Itr_sc001950.1_g00001.1 1129 LYNDYAYRVGFSVRKGKQRYQGSTNNVKMKTFLCSKAGCKSKENVG--VKAYSNIDLRMRCGAFVQFDVNGNGVWTVTKHEKAH 1210 7******************99*************999877..889999************************** PP FAR1 86 nHel 89 nHel Itr_sc001950.1_g00001.1 1211 NHEL 1214 *9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56219	3.17E-10	46	135	IPR005135	Endonuclease/exonuclease/phosphatase
PROSITE profile	PS50878	8.917	361	597	IPR000477	Reverse transcriptase domain
CDD	cd01650	3.13E-41	377	596	No hit	No description
Pfam	PF00078	9.5E-25	380	576	IPR000477	Reverse transcriptase domain
Gene3D	G3DSA:3.30.420.10	5.0E-5	866	956	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF53098	1.07E-10	871	962	IPR012337	Ribonuclease H-like domain
CDD	cd06222	3.28E-16	875	974	No hit	No description
Pfam	PF13456	2.2E-14	876	970	No hit	No description
Pfam	PF03101	3.7E-16	1129	1214	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 1433 aa Download sequence Send to blast
MPLNTGAEYV SQQQLAGAIA DDDDLPSKSV ILNSDSQLLS HSLASFRLLG RSGGLAMFWK 60 EEIQLSIVGY SQNHIDTNVQ LENSSMVWRF TGFYGQPERS RRKESWQLLT NLAKSSEFPW 120 LLMGDFNDIL HQKEKRAQKL HQWRSLQVTI CLFFFGLFRL WSVEGCSKAI WDWGKGLTKE 180 FATSLSTARK QMEALRGKCD QQSLRKFAAA QHSYLKVLNQ QNMYWKQRAK IFWYKEGDAN 240 TKFFHNVVRG RRKINKIERL KDNQGIWREK GQELNNLMIS YFQHIFQTFP GDLEKVVDCI 300 DSKITQKQNE ALLVKITFEE VKSATFSMQQ DKFPGPDGLN PGFYQAYWDI LSSDIVQLCN 360 MVLTTGKLPQ GINQTHLVLI PKKNKPEMMS DLRPIALCRV LYKIISKVLS NRMKPLLCNL 420 ISENQSAFVP GRLITDNVML AFETQHFMKR KTQGKEGFAA IKLDVSKAYD RAEWALLRAV 480 MIKMGFDLRW VNLITECVST VSYSILHEGV EIGPIVPQRG LRQAPGAPKI SHLFFADDSF 540 IFIKANQMES IALKEVLKKY GEASGQIINY EKYAVSFSPN VKDEMREQIK HIVEVSVRAG 600 REILLKNVIQ ALPLYAMSTF LLPKEMIKEI ERAMNSFWWR GETEGRRGIN WKEWNKLTAP 660 KNWGGLGFWK LRDFNLAMLS KQAWSLLETQ DIIRKHSRWR VGNGKAIRIW GDKWLPSQVD 720 AEIQTPPFPY LEEAPVSSLM KTGKNEWDDD IVREIFNNRD ASQILSIPLP VMQREDKLIW 780 KEDKKSLFSD WAEYHISTLS EEQVSQMITI CWKIWNARNN KIWNQRTSSS KLVADEGKIF 840 LADWRSIVER DRIRRNQTNQ RIAKWEKPNP GWMKLNSDAA VDERRGAMGL GWVLRDDQGN 900 FIAAISVPGK GVFTPSEAEG MAVREALSWL KVKGITKVQI ETDALLVIQQ LSEDEGVSSF 960 SLLILDIKDI QRLLAARSLL EAFKAFKFGR GALLLRKLCR GPRTQSLIAA EQSTKVFIAA 1020 EFSLAIPLPR NSSLIPQRNP SPIFYRNSSL IAHPNSSPIA DLNSSSIAHR NSSPLLFSIY 1080 IPFVFPILSS LMAETGDQPQ LHIDRSSSIA VDQDLVGIVV SNGDEAYELY NDYAYRVGFS 1140 VRKGKQRYQG STNNVKMKTF LCSKAGCKSK ENVGVKAYSN IDLRMRCGAF VQFDVNGNGV 1200 WTVTKHEKAH NHELYGIRFL KHQSGGSPLV GSRQCNESDF FFDFEVDGDA RLTSYFWRDG 1260 QMRRDYELFG DLLVHDATYR TNKYDMICGP FVGMNHHCMN VIHDCCHLSS VYNITVSSLH 1320 MAYRMVIDYK CHKNPWWTKK VAEGKAVDMG SLSSNVGVAP SIWVVEMTRK FQRLNVSCQD 1380 NSAAKQRCEE AFQSAKKSVE TEVGYVHIEE SDVPSSSGIV QDPSSRRLKG ERN

Sequence ? help Back to Top

Protein Sequence Length: 1433 aa Download sequence Send to blast

MPLNTGAEYV SQQQLAGAIA DDDDLPSKSV ILNSDSQLLS HSLASFRLLG RSGGLAMFWK  60
EEIQLSIVGY SQNHIDTNVQ LENSSMVWRF TGFYGQPERS RRKESWQLLT NLAKSSEFPW  120
LLMGDFNDIL HQKEKRAQKL HQWRSLQVTI CLFFFGLFRL WSVEGCSKAI WDWGKGLTKE  180
FATSLSTARK QMEALRGKCD QQSLRKFAAA QHSYLKVLNQ QNMYWKQRAK IFWYKEGDAN  240
TKFFHNVVRG RRKINKIERL KDNQGIWREK GQELNNLMIS YFQHIFQTFP GDLEKVVDCI  300
DSKITQKQNE ALLVKITFEE VKSATFSMQQ DKFPGPDGLN PGFYQAYWDI LSSDIVQLCN  360
MVLTTGKLPQ GINQTHLVLI PKKNKPEMMS DLRPIALCRV LYKIISKVLS NRMKPLLCNL  420
ISENQSAFVP GRLITDNVML AFETQHFMKR KTQGKEGFAA IKLDVSKAYD RAEWALLRAV  480
MIKMGFDLRW VNLITECVST VSYSILHEGV EIGPIVPQRG LRQAPGAPKI SHLFFADDSF  540
IFIKANQMES IALKEVLKKY GEASGQIINY EKYAVSFSPN VKDEMREQIK HIVEVSVRAG  600
REILLKNVIQ ALPLYAMSTF LLPKEMIKEI ERAMNSFWWR GETEGRRGIN WKEWNKLTAP  660
KNWGGLGFWK LRDFNLAMLS KQAWSLLETQ DIIRKHSRWR VGNGKAIRIW GDKWLPSQVD  720
AEIQTPPFPY LEEAPVSSLM KTGKNEWDDD IVREIFNNRD ASQILSIPLP VMQREDKLIW  780
KEDKKSLFSD WAEYHISTLS EEQVSQMITI CWKIWNARNN KIWNQRTSSS KLVADEGKIF  840
LADWRSIVER DRIRRNQTNQ RIAKWEKPNP GWMKLNSDAA VDERRGAMGL GWVLRDDQGN  900
FIAAISVPGK GVFTPSEAEG MAVREALSWL KVKGITKVQI ETDALLVIQQ LSEDEGVSSF  960
SLLILDIKDI QRLLAARSLL EAFKAFKFGR GALLLRKLCR GPRTQSLIAA EQSTKVFIAA  1020
EFSLAIPLPR NSSLIPQRNP SPIFYRNSSL IAHPNSSPIA DLNSSSIAHR NSSPLLFSIY  1080
IPFVFPILSS LMAETGDQPQ LHIDRSSSIA VDQDLVGIVV SNGDEAYELY NDYAYRVGFS  1140
VRKGKQRYQG STNNVKMKTF LCSKAGCKSK ENVGVKAYSN IDLRMRCGAF VQFDVNGNGV  1200
WTVTKHEKAH NHELYGIRFL KHQSGGSPLV GSRQCNESDF FFDFEVDGDA RLTSYFWRDG  1260
QMRRDYELFG DLLVHDATYR TNKYDMICGP FVGMNHHCMN VIHDCCHLSS VYNITVSSLH  1320
MAYRMVIDYK CHKNPWWTKK VAEGKAVDMG SLSSNVGVAP SIWVVEMTRK FQRLNVSCQD  1380
NSAAKQRCEE AFQSAKKSVE TEVGYVHIEE SDVPSSSGIV QDPSSRRLKG ERN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019168924.1	0.0	PREDICTED: uncharacterized protein LOC109164833

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	3e-16	FAR1-related sequence 7