PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001863.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 272aa    MW: 30983.6 Da    PI: 7.2514
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001863.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.4e-18125179256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ +++keq  +Le+ F+++ +++ ++++eLA++l+L  rqV vWFqNrRa+ k
  Itr_sc001863.1_g00015.1 125 RKKLRLNKEQSVVLEDSFKQHTTLNSKQKQELARRLSLRPRQVEVWFQNRRARTK 179
                              678899***********************************************98 PP
2HD-ZIP_I/II1192.5e-38125214190
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl+keq+ +LE+sF+++++L++++K+elar+L l+prqv+vWFqnrRARtk+kq+E+dye+L+++y++l++en+rL+ke +e
  Itr_sc001863.1_g00015.1 125 RKKLRLNKEQSVVLEDSFKQHTTLNSKQKQELARRLSLRPRQVEVWFQNRRARTKLKQTEVDYEVLRKCYETLTDENRRLHKELQE 210
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lree 90 
                              L+++
  Itr_sc001863.1_g00015.1 211 LKAA 214
                              *965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-17101182IPR009057Homeodomain-like
PROSITE profilePS5007116.86121181IPR001356Homeobox domain
SMARTSM003892.2E-15123185IPR001356Homeobox domain
SuperFamilySSF466891.13E-17124190IPR009057Homeodomain-like
PfamPF000463.5E-15125179IPR001356Homeobox domain
CDDcd000864.34E-15125182No hitNo description
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PfamPF021832.8E-11181213IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.8E-17181227IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGLEDIYSTK LTLSLGSDDV PHREYDDHHL HRRHVYRQNK RSKPSPISDN YLPSLSLGLP  60
WELKFEAMND CCLQQASPAP PSSFSDSSLK REREIISGGE DEELEAEEKG SAGDEYQDEE  120
VVGTRKKLRL NKEQSVVLED SFKQHTTLNS KQKQELARRL SLRPRQVEVW FQNRRARTKL  180
KQTEVDYEVL RKCYETLTDE NRRLHKELQE LKAANNQTTA PPFHMAATLS MCPSCERTYG  240
GSTDSSAKFS ISAAAGGKSH FFRSFLNPSA AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129TRKKLRL
2173181RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153388.11e-151PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466045e-63HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2G9H1F97e-71A0A2G9H1F9_9LAMI; Transcription factor HEX
STRINGcassava4.1_013986m3e-71(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-63HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]