PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001859.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 343aa MW: 38149.1 Da PI: 8.3094

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001859.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128.3	5.9e-40	19	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskr.dkkyatgkrknratksgyWk 84 lppGfrF+Pt++e+v +yL++k+ + +l++ +vi+e+ +i++++Pw+Lp + e+++ yfFs++ ++ky++g++++r+ ++gyWk Itr_sc001859.1_g00003.1 19 LPPGFRFQPTEQEIVFQYLQRKTFSLSLPA-SVIPELpNICRYDPWNLPGDM--EQEDRYFFSSKeATKYPNGNQTSRVSSNGYWK 101 79**************************.8999********766..5567788876516799************ PP NAM 85 .atgkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128 ++ ++k++++ +++ +g+kktLvfy g+ p+g+kt+W+mh+yrl Itr_sc001859.1_g00003.1 102 pSSSEEKHITCPGKSSssipmiMGMKKTLVFYYGKPPHGSKTNWIMHQYRL 152 4445578888875444678899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.19E-41	16	195	IPR003441	NAC domain
PROSITE profile	PS51005	42.858	19	195	IPR003441	NAC domain
Pfam	PF02365	1.1E-22	20	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MDGRLRLHFV RDDGEVVKLP PGFRFQPTEQ EIVFQYLQRK TFSLSLPASV IPELPNICRY 60 DPWNLPGDME QEDRYFFSSK EATKYPNGNQ TSRVSSNGYW KPSSSEEKHI TCPGKSSSSI 120 PMIMGMKKTL VFYYGKPPHG SKTNWIMHQY RLVAISPAGN PPPPPYFRHA MKKDHSQGSL 180 MQQIGNLVIC HVFQKKRVNG KAGGESAEVC EDNINISINE DENVDRYNLM MMRDGLSSSS 240 CSDDGDSCVS SCSSSRVLND EVSSSYSCGT LGYGHLKFRR TPAKIPASEA LSAAVAFGAI 300 SVELNGDGEQ FSISVRRRWR PLVSPSPFDG DATFGITKKS CTN

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MDGRLRLHFV RDDGEVVKLP PGFRFQPTEQ EIVFQYLQRK TFSLSLPASV IPELPNICRY  60
DPWNLPGDME QEDRYFFSSK EATKYPNGNQ TSRVSSNGYW KPSSSEEKHI TCPGKSSSSI  120
PMIMGMKKTL VFYYGKPPHG SKTNWIMHQY RLVAISPAGN PPPPPYFRHA MKKDHSQGSL  180
MQQIGNLVIC HVFQKKRVNG KAGGESAEVC EDNINISINE DENVDRYNLM MMRDGLSSSS  240
CSDDGDSCVS SCSSSRVLND EVSSSYSCGT LGYGHLKFRR TPAKIPASEA LSAAVAFGAI  300
SVELNGDGEQ FSISVRRRWR PLVSPSPFDG DATFGITKKS CTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-31	17	153	15	143	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-31	17	153	15	143	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-31	17	153	15	143	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-31	17	153	15	143	NO APICAL MERISTEM PROTEIN
4dul_A	1e-31	17	153	15	143	NAC domain-containing protein 19
4dul_B	1e-31	17	153	15	143	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019160703.1	1e-162	PREDICTED: NAC domain-containing protein 83-like
TrEMBL	A0A2Z5HVJ7	0.0	A0A2Z5HVJ7_IPOBA; NAC12 protein
STRING	XP_009597132.1	6e-67	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	6e-54	NAC domain containing protein 83