PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001843.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 263aa    MW: 27564.8 Da    PI: 7.8052
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001843.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.85.9e-181856745
                             HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             sn +vtfskRr+g++KKA+ LS+LC a++a+i+fs+ g+
  Itr_sc001843.1_g00001.1 18 SNLEVTFSKRRAGLFKKASVLSTLCRADIAIIVFSPAGN 56
                             7889********************************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004042.1E-7626IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-171064IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-181179IPR002100Transcription factor, MADS-box
PfamPF003194.8E-181861IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.3761855IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-72641IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-74162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MLAMAARTSR GRQRIEMSNL EVTFSKRRAG LFKKASVLST LCRADIAIIV FSPAGNKVFS  60
FGHPTVEAVV ERFLGENNPS PVNETGGEAL ATEQFIEAQR NARANSEAHG WMRGSYDELS  120
FQPLLTLKTG MENLLKEIQQ KAYHQFMALH GNGTPFNPYA GGVFPSENMV PRDPTFEFNF  180
GTDGGAAGTL PFTSGVPGAH PFTSGGAAGA LPLTSGVPGA HPSTSGSSSM AASGYNTVSP  240
WVASTSGASN SAGGNLGATH AFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196307.11e-72PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P5EMV04e-34A0A2P5EMV0_TREOI; MADS-box transcription factor
STRINGEOX972437e-34(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.15e-29AGAMOUS-like 28