PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001779.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 336aa MW: 38255.6 Da PI: 10.023

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001779.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.2	1.4e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++ Itr_sc001779.1_g00008.1 9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAT 59 79***********************************************86 PP
2	K-box	88.6	1.2e-29	114	194	4	84
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 ++ +s++++ + s++ e+akLk+++e Lq++qRh+ GedL+sLslkeLq+Le++L+++lk+iRskKn+l++e+i+elqkk Itr_sc001779.1_g00008.1 114 RQLNSTDQNSQGSWTLEHAKLKARMEVLQKNQRHYEGEDLDSLSLKELQNLERKLDSALKNIRSKKNQLMFESISELQKKS 194 567778888899*******************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.52	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.9E-40	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.15E-29	2	74	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.10E-36	2	65	No hit	No description
PRINTS	PR00404	4.2E-31	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-31	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.1E-24	119	194	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.994	124	277	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYATE 60 SCYRMGDSRM AKQKSSIVRA IIQVKSNPER ELVGVEAKVA IGARMGIVGR QSERQLNSTD 120 QNSQGSWTLE HAKLKARMEV LQKNQRHYEG EDLDSLSLKE LQNLERKLDS ALKNIRSKKN 180 QLMFESISEL QKKSPGVGVV FTDQIRQTLK IKRLPDTPKA IAYSVIFLCP HTFFFPSHRV 240 LELSNNSPPT SLKLIIKQRE KEIAQQQQQQ QQEVQWEQPN DDINSSYVVP PPLVHLNSEG 300 GYQGEGEYGE AEGTHQHQQQ SNTTAMPQWM LSHLHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	3e-19	1	59	1	59	MEF2 CHIMERA
6bz1_B	3e-19	1	59	1	59	MEF2 CHIMERA
6bz1_C	3e-19	1	59	1	59	MEF2 CHIMERA
6bz1_D	3e-19	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU672820	1e-116	EU672820.1 Ipomoea nil fruitfull-like protein (FUL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199881.1	1e-110	PREDICTED: truncated transcription factor CAULIFLOWER A-like
Swissprot	Q42429	2e-85	AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBL	B2ZJV6	1e-108	B2ZJV6_IPONI; Fruitfull-like protein
STRING	XP_009792071.1	4e-88	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA499	23	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	2e-68	AGAMOUS-like 8

Publications ? help Back to Top
Kang SG,Hannapel DJ Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs. Gene, 1995. 166(2): p. 329-30 [PMID:8543185]