PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001746.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YC
Protein Properties Length: 133aa    MW: 15187.6 Da    PI: 10.3547
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001746.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC52.31.3e-1616971898
                    NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                             + ++P  r+kki+k d++vk++ +ea  l+s++ elf+  l+ +s   a e+kr+t+k   +  av+r   + dfl+d  p 
  Itr_sc001746.1_g00001.1 16 RLQIPTGRVKKIMKIDDEVKKVNSEALFLISRSTELFLEFLAEKSAEVAVEKKRKTVKLEHLRLAVKRHRpTSDFLLDSLPM 97
                             5689**************************************************************9975389*****9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.41E-201297IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.2E-211682IPR009072Histone-fold
PfamPF008081.2E-201881IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MAEEVPEENG VERTCRLQIP TGRVKKIMKI DDEVKKVNSE ALFLISRSTE LFLEFLAEKS  60
AEVAVEKKRK TVKLEHLRLA VKRHRPTSDF LLDSLPMPSQ PSHQPSKASR SRSDDKPAPR  120
GTRKIDAFFQ KCT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179282.13e-87PREDICTED: chromatin accessibility complex protein 1-like
TrEMBLA0A484KLV52e-58A0A484KLV5_9ASTE; Uncharacterized protein
STRINGSolyc05g015330.1.16e-55(Solanum lycopersicum)
STRINGPGSC0003DMT4000748415e-55(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114352425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.16e-48nuclear factor Y, subunit C13