PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001721.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 313aa MW: 35109.1 Da PI: 8.9168

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001721.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.7e-05	87	200	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC............................................................ CS HLH 5 hnerErrRRdriNsafeeLrellPkas........................................................... 31 h + Er RR+r ++++ L +llP + Itr_sc001721.1_g00007.1 87 HMISERMRRERQKQSYLALHRLLPLGTkhpigsqgricsvyntpigsqgrvcpvytsnstvaasfpcrhpknltrvapeldrlakn 172 7889********************95447888777777777777777777777777777777777777777777777777777777 PP .......TTS-STCHHHHHHHHHHHHHH CS HLH 32 .....kapskKlsKaeiLekAveYIksL 54 ++ k +K +i ++A I++L Itr_sc001721.1_g00007.1 173 negltQGVLKEGDKNTIIQMAATRIQEL 200 7777444444477777777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.0E-8	79	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-6	86	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-6	181	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.0E-8	182	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDEFFQNGCN SHQETATLQW FDDFPLVNPS AFVKYVDLRV GGVGSKGGGS GSSRDGNANK 60 RMMEFLGKMW KPALQTMQTA QERVHRHMIS ERMRRERQKQ SYLALHRLLP LGTKHPIGSQ 120 GRICSVYNTP IGSQGRVCPV YTSNSTVAAS FPCRHPKNLT RVAPELDRLA KNNEGLTQGV 180 LKEGDKNTII QMAATRIQEL EVCKEELMRR NSEIEMTLAA SNNENNEGVS NKGKIINVKV 240 AYPSCGIDSM LQVLKCLKNS ETKLRSMHSK FSPQEFSALL EIESKVGVAE VENAVQRRLM 300 EAETNFHCNF LQE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	96	RMRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019180455.1	1e-74	PREDICTED: transcription factor bHLH92 isoform X1
STRING	XP_009614938.1	3e-28	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12463	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	4e-20	bHLH family protein